myRT

myRT report for GCA_001659815.1_ASM165981v1

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Seq: LXYC01000064.1 Escherichia coli strain 016PP2015 NODE_61, whole genome shotgun sequence (3897 bp)
Overview 1 RT 1: 360-3561 bp Neighborhood of RT #1 [360, 3561] Rop CspC RVT-Retrons Feature: gene Location: 360-554 bp Feature: domain Description: Rop Location: 363-531 bp Feature: domain Description: Rop Location: 363-531 bp Feature: gene Location: 1392-1595 bp Feature: domain Description: CspC Location: 1395-1590 bp Feature: domain Description: CspC Location: 1 395-1 590 bp Feature: gene Location: 1600-2739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1744-2299 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 744-2299 bp Feature: gene Location: 3313-3561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons, Rop (pfam01815)

Seq: LXYC01000023.1 Escherichia coli strain 016PP2015 NODE_12, whole genome shotgun sequence (167652 bp)
Overview 1 RT 1: 120657-127975 bp Neighborhood of RT #1 [120657, 127975] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 120657-121676 bp Feature: domain Description: DUF4917 Location: 120717-121641 bp Feature: domain Description: DUF4917 Location: 12 0717-12 1641 bp Feature: gene Location: 122740-124986 bp Feature: domain Description: AAA_15 Location: 122743-123751 bp Feature: domain Description: AAA_15 Location: 12 2 743-12 3751 bp Feature: gene Location: 125101-126201 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125284-125812 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 52 84-12 5812 bp Feature: gene Location: 126857-127726 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 127379-127550 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 12 7379-12 7550 bp Feature: gene Location: 127733-127975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: LXYC01000036.1 Escherichia coli strain 016PP2015 NODE_13, whole genome shotgun sequence (153696 bp)
Overview 1 RT 1: 100456-104337 bp Neighborhood of RT #1 [100456, 104342] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 100456-101172 bp Feature: domain Description: rph Location: 100459-101167 bp Feature: domain Description: rph Location: 100459-101167 bp Feature: gene Location: 101237-101878 bp Feature: domain Description: pyrE Location: 101240-101873 bp Feature: domain Description: pyrE Location: 101240-101873 bp Feature: gene Location: 102176-103135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 102311-102860 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1023 11-102860 bp Feature: gene Location: 103181-103777 bp Feature: domain Description: slmA Location: 103187-103763 bp Feature: domain Description: slmA Location: 103 187-103 763 bp Feature: gene Location: 103884-104342 bp Feature: domain Description: dut Location: 103890-104337 bp Feature: domain Description: dut Location: 103 890-1043 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LXYC01000045.1 Escherichia coli strain 016PP2015 NODE_27, whole genome shotgun sequence (51157 bp)
Overview 1 RT 1: 44907-51157 bp Neighborhood of RT #1 [44907, 51157] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 44907-46493 bp Feature: domain Description: prfC Location: 44925-46491 bp Feature: domain Description: prfC Location: 4 4 925-4 64 91 bp Feature: gene Location: 46713-46973 bp Feature: domain Description: PRK10597 Location: 46716-46956 bp Feature: domain Description: PRK10597 Location: 4 6716-4 6956 bp Feature: gene Location: 47333-48937 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47624-48215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 7624 -4 8215 bp Feature: domain Description: TIR_2 Location: 48542-48830 bp Feature: domain Description: TIR_2 Location: 4 854 2-4 8830 bp Feature: gene Location: 49382-49966 bp Feature: domain Description: Caudo_TAP Location: 49598-49955 bp Feature: domain Description: Caudo_TAP Location: 4 9598-4 9955 bp Feature: gene Location: 49966-51157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413)