myRT

myRT report for GCA_001661495.1_ASM166149v1

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Seq: BDDT01000005.1 Pseudoalteromonas prydzensis DSM 14232 DNA, contig: PPDS05, whole genome shotgun sequence (320013 bp)
Overview 1 RT 1: 104789-106395 bp Neighborhood of RT #1 [104789, 106395] PHA02517 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 104789-104965 bp Feature: gene Location: 104986-105387 bp Feature: domain Description: PHA02517 Location: 105022-105343 bp Feature: domain Description: PHA0251 7 Location: 1 05022-1 05343 bp Feature: gene Location: 105299-105430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105302-105407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 05302-1 05407 bp Feature: gene Location: 105740-106057 bp Feature: domain Description: DDE_Tnp_IS66 Location: 105746-105914 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 05746-1 0591 4 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 105932-106040 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 05932-1 06040 bp Feature: gene Location: 106090-106395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: BDDT01000009.1 Pseudoalteromonas prydzensis DSM 14232 DNA, contig: PPDS09, whole genome shotgun sequence (152914 bp)
Overview 1 RT 1: 150418-152872 bp Neighborhood of RT #1 [150418, 152913] DDE_Tnp_1_6 RAYT RAYT RVT-GII Feature: gene Location: 150418-150702 bp Feature: domain Description: DDE_Tnp_1_6 Location: 150439-150685 bp Feature: domain Description: DDE_Tnp_1_6 Location: 150439-150685 bp Feature: gene Location: 151222-152226 bp Feature: domain Description: RAYT Location: 151273-151471 bp Feature: domain Description: RAYT Location: 1512 73-151471 bp Feature: domain Description: RAYT Location: 151639-151825 bp Feature: domain Description: RAYT Location: 151639-15182 5 bp Feature: gene Location: 152302-152913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152332-152872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 332 -152 872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_6 (pfam13751), RAYT (COG1943), RVT-GII

Seq: BDDT01000014.1 Pseudoalteromonas prydzensis DSM 14232 DNA, contig: PPDS14, whole genome shotgun sequence (105058 bp)
Overview 1 RT 1: 83217-87881 bp Neighborhood of RT #1 [83217, 87881] SapF TIR_2 RVT-GII Feature: gene Location: 83217-83978 bp Feature: domain Description: SapF Location: 83220-83973 bp Feature: domain Description: SapF Location: 83 220-83 973 bp Feature: gene Location: 84289-85302 bp Feature: domain Description: TIR_2 Location: 84454-84775 bp Feature: domain Description: TIR_2 Location: 84454-84775 bp Feature: gene Location: 85529-86539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85823-86447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85823 -86447 bp Feature: gene Location: 87185-87577 bp Feature: gene Location: 87609-87881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SapF (COG4167), TIR_2 (pfam13676), RVT-GII