myRT

myRT report for GCA_001672015.1_ASM167201v1

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Seq: CP016034.1 Escherichia coli isolate Co6114 genome (4893592 bp)
Overview 1 RT 1: 107656-115352 bp 2 RT 2: 1994712-2002364 bp 3 RT 3: 3811864-3814819 bp Neighborhood of RT #1 [107656, 115372] Arm-DNA-bind_3 INT_P4_C PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Neighborhood of RT #2 [1994712, 2002364] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #3 [3811864, 3814863] RVT-GII GIIM PHA02517 HTH_Tnp_1 Feature: gene Location: 107656-108975 bp Ori: ANM81062.1 Feature: domain Description: Arm-DNA-bind_3 Location: 107680-107947 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 07680-1 07947 bp Feature: domain Description: INT_P4_C Location: 108313-108904 bp Feature: domain Description: INT_P4_C Location: 1 0831 3-1 08904 bp Feature: gene Location: 109350-110528 bp Ori: ANM81063.1 Feature: domain Description: PRK09692 Location: 109356-110514 bp Feature: domain Description: PRK09692 Location: 1 09356-1 1 051 4 bp Feature: gene Location: 110530-111501 bp Ori: ANM81064.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 110815-111277 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 1 081 5-1 1 1 277 bp Feature: gene Location: 112092-114095 bp Ori: ANM81065.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 112587-113034 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 1 2587-1 1 3034 bp Feature: gene Location: 114544-114816 bp Ori: ANM81066.1 Feature: domain Description: PRK09678 Location: 114553-114721 bp Feature: domain Description: PRK09678 Location: 1 1 4553-1 1 4721 bp Feature: gene Location: 114818-115372 bp Ori: ANM81067.1 Feature: domain Description: Psu Location: 114842-115352 bp Feature: domain Description: Psu Location: 1 1 4842-1 1 5352 bp Feature: gene Location: 1994712-1995731 bp Ori: ANM82777.1 Feature: domain Description: DUF4917 Location: 1994772-1995696 bp Feature: domain Description: DUF491 7 Location: 1 994772-1 995696 bp Feature: gene Location: 1997130-1999376 bp Ori: ANM82778.1 Feature: domain Description: AAA_15 Location: 1997133-1998141 bp Feature: domain Description: AAA_1 5 Location: 1 9971 33-1 9981 41 bp Feature: gene Location: 1999491-2000591 bp Ori: ANM82779.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1999671-2000205 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 999671 -2000205 bp Feature: gene Location: 2001247-2002116 bp Ori: ANM82780.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2001769-2001940 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 2001 769-2001 940 bp Feature: gene Location: 2002113-2002364 bp Feature: gene Location: 3811864-3812235 bp Feature: gene Location: 3812150-3812575 bp Feature: gene Location: 3812544-3814052 bp Ori: ANM85558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3812802-3813534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 2802-381 3534 bp Feature: domain Description: GIIM Note: maturase Location: 3813609-3813807 bp Feature: domain Description: GIIM Note: maturase Location: 381 3609-381 3807 bp Feature: gene Location: 3814229-3814615 bp Ori: ANM84437.1 Feature: domain Description: PHA02517 Location: 3814232-3814613 bp Feature: domain Description: PHA0251 7 Location: 381 4232-381 461 3 bp Feature: gene Location: 3814618-3814863 bp Ori: ANM84438.1 Feature: domain Description: HTH_Tnp_1 Location: 3814627-3814819 bp Feature: domain Description: HTH_Tnp_1 Location: 381 4627-381 481 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), PRK09692 (Integrase; provisional), RVT-UG3, RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455), DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons
Nuc_deoxyrib_tr (pfam05014), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527)