myRT

myRT report for GCA_001672085.1_ASM167208v1

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Seq: LJOU01000201.1 Anabaena sp. AL93 isolate WA93 2464, whole genome shotgun sequence (1983 bp)
Overview 1 RT 1: 319-1864 bp Neighborhood of RT #1 [319, 1893] RVT_N RVT-GII McrA Feature: gene Location: 319-1893 bp Feature: RT Description: RVT_N Location: 355-601 bp Feature: RT Description: RVT_N Location: 355-601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652-1309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652-1 309 bp Feature: domain Description: McrA Location: 1543-1864 bp Feature: domain Description: McrA Location: 1 543-1 864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LJOU01000009.1 Anabaena sp. AL93 isolate WA93 57, whole genome shotgun sequence (75975 bp)
Overview 1 RT 1: 49774-56693 bp Neighborhood of RT #1 [49774, 56713] RVT_N RVT-GII McrA HTH_MerR-trunc PRK05192 Feature: gene Location: 49774-51033 bp Feature: gene Location: 51793-52287 bp Feature: gene Location: 52408-53982 bp Feature: RT Description: RVT_N Location: 52444-52690 bp Feature: RT Description: RVT_N Location: 52 444-52 690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52744-53398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 744-53398 bp Feature: domain Description: McrA Location: 53629-53953 bp Feature: domain Description: McrA Location: 5362 9-53953 bp Feature: gene Location: 54513-54695 bp Feature: domain Description: HTH_MerR-trunc Location: 54576-54675 bp Feature: domain Description: HTH_MerR-trunc Location: 54576-54675 bp Feature: gene Location: 54800-56713 bp Feature: domain Description: PRK05192 Location: 54833-56693 bp Feature: domain Description: PRK05192 Location: 54833-56693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), HTH_MerR-trunc (cd04762), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG)

Seq: LJOU01000083.1 Anabaena sp. AL93 isolate WA93 177, whole genome shotgun sequence (28501 bp)
Overview 1 RT 1: 1-6108 bp Neighborhood of RT #1 [1, 6122] PRK13034 RVT-DGRs Avd_like STKc_PknB_like YfmG Feature: gene Location: 1-89 bp Feature: gene Location: 816-2099 bp Feature: domain Description: PRK13034 Location: 828-2064 bp Feature: domain Description: PRK13 03 4 Location: 828-2064 bp Feature: gene Location: 2273-3358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2480-3200 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2480-3 200 bp Feature: gene Location: 3466-3816 bp Feature: domain Description: Avd_like Location: 3484-3790 bp Feature: domain Description: Avd_like Location: 3 484-3 790 bp Feature: gene Location: 4341-6122 bp Feature: domain Description: STKc_PknB_like Location: 4437-5211 bp Feature: domain Description: STKc_PknB_like Location: 443 7-5211 bp Feature: domain Description: YfmG Location: 5355-6108 bp Feature: domain Description: YfmG Location: 53 55-6108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), STKc_PknB_like (cd14014), YfmG (COG1262), PRK13034 (serine hydroxymethyltransferase; Reviewed)

Seq: LJOU01000109.1 Anabaena sp. AL93 isolate WA93 228, whole genome shotgun sequence (17702 bp)
Overview 1 RT 1: 1-6917 bp Neighborhood of RT #1 [1, 7009] COG3464 VacB RVT_N RVT-GII McrA rps18 RDD Feature: gene Location: 1-279 bp Feature: domain Description: COG3464 Location: 13-256 bp Feature: domain Description: COG34 64 Location: 13-256 bp Feature: gene Location: 1328-3388 bp Feature: domain Description: VacB Location: 1391-3272 bp Feature: domain Description: VacB Location: 1391-3272 bp Feature: gene Location: 3872-5443 bp Feature: RT Description: RVT_N Location: 3908-4148 bp Feature: RT Description: RVT_N Location: 3908-4 14 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4205-4859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 205-4 859 bp Feature: domain Description: McrA Location: 5093-5414 bp Feature: domain Description: McrA Location: 5093-54 14 bp Feature: gene Location: 5995-6210 bp Feature: domain Description: rps18 Location: 6004-6205 bp Feature: domain Description: rps18 Location: 6004 -6205 bp Feature: gene Location: 6455-7009 bp Feature: domain Description: RDD Location: 6503-6917 bp Feature: domain Description: RDD Location: 6503-6917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), VacB (COG0557), RVT_N (pfam13655), RVT-GII, McrA (COG4058), rps18 (CHL00077), RDD (pfam06271)

Seq: LJOU01000134.1 Anabaena sp. AL93 isolate WA93 292, whole genome shotgun sequence (11415 bp)
Overview 1 RT 1: 2600-8626 bp Neighborhood of RT #1 [2600, 8766] HTH_OrfB_IS605 RVT_N RVT-GII GIIM McrA PLN02449 UbiE Feature: gene Location: 2600-2782 bp Feature: gene Location: 2842-3045 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2845-2971 bp Feature: domain Description: HTH_OrfB_IS605 Location: 2845 -2971 bp Feature: gene Location: 4219-6006 bp Feature: RT Description: RVT_N Location: 4258-4504 bp Feature: RT Description: RVT_N Location: 425 8-45 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4546-5230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 46-5 230 bp Feature: domain Description: GIIM Note: maturase Location: 5314-5542 bp Feature: domain Description: GIIM Note: maturase Location: 5 314-5 5 42 bp Feature: domain Description: McrA Location: 5632-5902 bp Feature: domain Description: McrA Location: 5 632-5 902 bp Feature: gene Location: 6874-8040 bp Feature: domain Description: PLN02449 Location: 6880-8017 bp Feature: domain Description: PLN02449 Location: 6880-8017 bp Feature: gene Location: 8134-8766 bp Feature: domain Description: UbiE Location: 8212-8626 bp Feature: domain Description: UbiE Location: 8212-8626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_OrfB_IS605 (pfam12323), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PLN02449 (ferrochelatase), UbiE (COG2226)

Seq: LJOU01000004.1 Anabaena sp. AL93 isolate WA93 44, whole genome shotgun sequence (85043 bp)
Overview 1 RT 1: 56274-65065 bp Neighborhood of RT #1 [56274, 65082] KOG1546 KOG1546 DUF4384 RVT_N RVT-GII YkfC HNHc devC heterocyst_DevB Feature: gene Location: 56274-58550 bp Feature: domain Description: KOG1546 Location: 56391-56853 bp Feature: domain Description: KOG1546 Location: 56 391-56 853 bp Feature: domain Description: KOG1546 Location: 56997-57234 bp Feature: domain Description: KOG1546 Location: 56 997-57234 bp Feature: domain Description: DUF4384 Location: 58053-58308 bp Feature: domain Description: DUF4384 Location: 58053-58308 bp Feature: gene Location: 59544-61190 bp Feature: RT Description: RVT_N Location: 59595-59838 bp Feature: RT Description: RVT_N Location: 59595-59838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59880-60492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59880-6 0492 bp Feature: domain Description: YkfC Location: 60588-60792 bp Feature: domain Description: YkfC Location: 6 0588-6 0792 bp Feature: domain Description: HNHc Note: nucleases Location: 60987-61161 bp Feature: domain Description: HNHc Note: nucleases Location: 6 0987-6 116 1 bp Feature: gene Location: 62620-63771 bp Feature: domain Description: devC Location: 62632-63769 bp Feature: domain Description: devC Location: 6 26 32-6 376 9 bp Feature: gene Location: 63787-65082 bp Feature: domain Description: heterocyst_DevB Location: 63955-65065 bp Feature: domain Description: heterocyst_DevB Location: 6 3955-6 506 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1546 (KOG1546, Metacaspase involved in regulation of apoptosis ), DUF4384 (pfam14326), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), devC (TIGR01185), heterocyst_DevB (TIGR02971)