myRT

myRT report for GCA_001672195.1_ASM167219v1

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Seq: LJOV01000497.1 Anabaena sp. MDT14b 680, whole genome shotgun sequence (3161 bp)
Overview 1 RT 1: 1-2680 bp Neighborhood of RT #1 [1, 3161] RVT-UG26 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 1-3161 bp Ori: OBQ33204.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 910-1054 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 91 0-1 054 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1378-1729 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1 378-1 729 bp Feature: domain Description: Integrase_H2C2 Location: 2137-2296 bp Feature: domain Description: Integrase_H2C2 Location: 21 37-2296 bp Feature: domain Description: rve Location: 2350-2680 bp Feature: domain Description: rve Location: 2350-2680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: LJOV01000023.1 Anabaena sp. MDT14b 97, whole genome shotgun sequence (21503 bp)
Overview 1 RT 1: 8036-15791 bp Neighborhood of RT #1 [8036, 15952] YkuD_like ComFB RVT_N RVT-GII McrA PRK13981 YjhB Feature: gene Location: 8036-8737 bp Ori: OBQ41361.1 Feature: domain Description: YkuD_like Location: 8363-8729 bp Feature: domain Description: YkuD_like Location: 8363-872 9 bp Feature: gene Location: 8779-9315 bp Ori: OBQ41362.1 Feature: domain Description: ComFB Location: 8968-9208 bp Feature: domain Description: ComFB Location: 8968-92 08 bp Feature: gene Location: 9902-11476 bp Ori: OBQ41363.1 Feature: domain Description: RVT_N Location: 9938-10184 bp Feature: domain Description: RVT_N Location: 9938-10184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10235-10892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 35-10892 bp Feature: domain Description: McrA Location: 11123-11447 bp Feature: domain Description: McrA Location: 1112 3-11447 bp Feature: gene Location: 12963-14654 bp Ori: OBQ41364.1 Feature: domain Description: PRK13981 Location: 12966-14628 bp Feature: domain Description: PRK13981 Location: 12 966-1462 8 bp Feature: gene Location: 15206-15952 bp Ori: OBQ41365.1 Feature: domain Description: YjhB Location: 15278-15791 bp Feature: domain Description: YjhB Location: 152 78-15791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkuD_like (cl21614), ComFB (pfam10719), RVT_N (pfam13655), RVT-GII, McrA (COG4058), PRK13981 (NAD synthetase; Provisional), YjhB (COG1051)

Seq: LJOV01000472.1 Anabaena sp. MDT14b 634, whole genome shotgun sequence (3396 bp)
Overview 1 RT 1: 281-3221 bp Neighborhood of RT #1 [281, 3361] RVT-UG26 RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_DDE_transposase_like Feature: gene Location: 281-3361 bp Ori: OBQ33349.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 779-923 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 779-923 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1247-1598 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1247-1598 bp Feature: domain Description: Integrase_H2C2 Location: 2015-2177 bp Feature: domain Description: Integrase_H2C2 Location: 2015-2177 bp Feature: domain Description: rve Location: 2228-2558 bp Feature: domain Description: rve Location: 2228-2558 bp Feature: domain Description: CD_DDE_transposase_like Location: 3074-3221 bp Feature: domain Description: CD_DDE_transposase_like Location: 3 074-3 221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_DDE_transposase_like (cd18978)

Seq: LJOV01000022.1 Anabaena sp. MDT14b 96, whole genome shotgun sequence (21693 bp)
Overview 1 RT 1: 1-7804 bp Neighborhood of RT #1 [1, 7815] RHH_1 RVT-UG25 pcrA PRK07883 pcrA COG5626 Feature: gene Location: 1-554 bp Feature: gene Location: 740-985 bp Feature: gene Location: 1415-4891 bp Ori: OBQ41383.1 Feature: domain Description: RHH_1 Location: 1658-1763 bp Feature: domain Description: RHH_1 Location: 1658-1763 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3287-3698 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3287-3698 bp Feature: gene Location: 4909-7380 bp Ori: OBQ41384.1 Feature: domain Description: pcrA Location: 4927-6214 bp Feature: domain Description: pcrA Location: 4 927-6214 bp Feature: domain Description: PRK07883 Location: 6286-6787 bp Feature: domain Description: PRK07883 Location: 6286-6787 bp Feature: domain Description: pcrA Location: 6808-7369 bp Feature: domain Description: pcrA Location: 6808-7369 bp Feature: gene Location: 7519-7815 bp Ori: OBQ41385.1 Feature: domain Description: COG5626 Location: 7522-7804 bp Feature: domain Description: COG5626 Location: 7522-7804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHH_1 (pfam01402), RVT-UG25, pcrA (TIGR01073), PRK07883 (DEDD exonuclease domain-containing protein), COG5626 (Uncharacterized protein )

Seq: LJOV01000728.1 Anabaena sp. MDT14b 1805, whole genome shotgun sequence (1327 bp)
Overview 1 RT 1: 1-1288 bp Neighborhood of RT #1 [1, 1287] RVT-UG26 RT_RNaseH_2 Feature: gene Location: 1-1287 bp Ori: OBQ32239.1 Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 658-802 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 65 8-802 bp Feature: domain Description: RT_RNaseH_2 Location: 1030-1288 bp Feature: domain Description: RT_RNaseH_2 Location: 1030-1288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26, RT_RNaseH_2 (pfam17919)

Seq: LJOV01000046.1 Anabaena sp. MDT14b 128, whole genome shotgun sequence (15864 bp)
Overview 1 RT 1: 1-2855 bp Neighborhood of RT #1 [1, 2884] COG4637 DUF4276 RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 1-672 bp Ori: OBQ40553.1 Feature: domain Description: COG4637 Location: 175-583 bp Feature: domain Description: COG46 37 Location: 175-583 bp Feature: gene Location: 672-1286 bp Ori: OBQ40554.1 Feature: domain Description: DUF4276 Location: 696-1272 bp Feature: domain Description: DUF4276 Location: 6 96 -1272 bp Feature: gene Location: 1367-2884 bp Ori: OBQ40555.1 Feature: domain Description: RVT_N Location: 1409-1649 bp Feature: domain Description: RVT_N Location: 1409-16 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706 -2132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132-2300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2132-2300 bp Feature: domain Description: GIIM Note: maturase Location: 2357-2531 bp Feature: domain Description: GIIM Note: maturase Location: 2357-2531 bp Feature: domain Description: McrA Location: 2552-2855 bp Feature: domain Description: McrA Location: 2552-2855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4637 (Predicted ATPase ), DUF4276 (pfam14103), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LJOV01000306.1 Anabaena sp. MDT14b 433, whole genome shotgun sequence (5486 bp)
Overview 1 RT 1: 1-4918 bp Neighborhood of RT #1 [1, 4947] SrmB TIGR01125 RVT_N RVT-GII McrA Feature: gene Location: 1-596 bp Ori: OBQ34700.1 Feature: domain Description: SrmB Location: 10-595 bp Feature: domain Description: SrmB Location: 10-595 bp Feature: gene Location: 662-2017 bp Ori: OBQ34701.1 Feature: domain Description: TIGR01125 Location: 683-1964 bp Feature: domain Description: TIGR01125 Location: 683-1964 bp Feature: gene Location: 3367-4947 bp Ori: OBQ34702.1 Feature: domain Description: RVT_N Location: 3403-3649 bp Feature: domain Description: RVT_N Location: 3403-3649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700-4363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 00-4363 bp Feature: domain Description: McrA Location: 4594-4918 bp Feature: domain Description: McrA Location: 4594-4918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SrmB (COG0513), TIGR01125 (ribosomal protein S12 methylthiotransferase RimO), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: LJOV01000718.1 Anabaena sp. MDT14b 1592, whole genome shotgun sequence (1429 bp)
Overview 1 RT 1: 1-1414 bp Neighborhood of RT #1 [1, 1427] retropepsin_like RVT-UNC Feature: gene Location: 1-1427 bp Ori: OBQ32268.1 Feature: domain Description: retropepsin_like Location: 331-565 bp Feature: domain Description: retropepsin_like Location: 331-565 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1270-1414 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1270-1414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG26/RVT-UG20/RVT-UG19(RVT-UNC)

Seq: LJOV01001108.1 Anabaena sp. MDT14b 11618, whole genome shotgun sequence (506 bp)
Overview 1 RT 1: 1-232 bp Neighborhood of RT #1 [1, 506] RVT-UNC Feature: gene Location: 1-506 bp Ori: OBQ28087.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 94-232 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 9 4-232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20/RVT-DGRs/RVT-UG7/RVT-CRISPR(RVT-UNC)

Seq: LJOV01000415.1 Anabaena sp. MDT14b 562, whole genome shotgun sequence (3983 bp)
Overview 1 RT 1: 237-3810 bp Neighborhood of RT #1 [237, 3983] retropepsin_like_LTR_1 RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_DDE_transposase_like Feature: gene Location: 237-3983 bp Ori: OBQ33740.1 Feature: domain Description: retropepsin_like_LTR_1 Location: 405-654 bp Feature: domain Description: retropepsin_like_LTR_1 Location: 405-654 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1359-1500 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1359-1500 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1827-2178 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1827-2178 bp Feature: domain Description: Integrase_H2C2 Location: 2604-2766 bp Feature: domain Description: Integrase_H2C2 Location: 2604-2766 bp Feature: domain Description: rve Location: 2817-3141 bp Feature: domain Description: rve Location: 2817-3141 bp Feature: domain Description: CD_DDE_transposase_like Location: 3663-3810 bp Feature: domain Description: CD_DDE_transposase_like Location: 3663-3810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like_LTR_1 (cd05481), RVT-UNC/RVT-UG26/RVT-UG21/RVT-DGRs(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_DDE_transposase_like (cd18978)