myRT

myRT report for GCA_001675175.1_ASM167517v1

Download annotations/find similar RTs

Seq: LMZF01000060.1 Rhizobium leucaenae strain CPAO 29.8 contig00097, whole genome shotgun sequence (24852 bp)
Overview 1 RT 1: 18261-21615 bp Neighborhood of RT #1 [18261, 21752] gabD RVT-GII COG3415 Feature: gene Location: 18261-19748 bp Feature: domain Description: gabD Location: 18291-19734 bp Feature: domain Description: gabD Location: 1 8291 -1 9734 bp Feature: gene Location: 20033-20218 bp Feature: gene Location: 20284-20547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20305-20539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20305-20539 bp Feature: gene Location: 20879-21088 bp Feature: gene Location: 21258-21752 bp Feature: domain Description: COG3415 Location: 21267-21615 bp Feature: domain Description: COG341 5 Location: 21 267-21 61 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gabD (PRK11241), RVT-GII, COG3415 (Transposase )

Seq: LMZF01000078.1 Rhizobium leucaenae strain CPAO 29.8 contig00119, whole genome shotgun sequence (22904 bp)
Overview 1 RT 1: 20347-22321 bp Neighborhood of RT #1 [20347, 22827] DUF4263 SLATT_5 RVT-UG17 Feature: gene Location: 20347-20634 bp Feature: domain Description: DUF4263 Location: 20353-20599 bp Feature: domain Description: DUF42 63 Location: 2 0353-2 0599 bp Feature: gene Location: 20927-21505 bp Feature: domain Description: SLATT_5 Location: 20954-21488 bp Feature: domain Description: SLATT_5 Location: 2 0954-2 1488 bp Feature: gene Location: 21511-22827 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 21739-22321 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 1739-2 2 32 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), SLATT_5 (pfam18160), RVT-UG17

Seq: LMZF01000079.1 Rhizobium leucaenae strain CPAO 29.8 contig00120, whole genome shotgun sequence (10834 bp)
Overview 1 RT 1: 7555-10627 bp Neighborhood of RT #1 [7555, 10722] RVT-GII GIIM Feature: gene Location: 7555-8553 bp Feature: gene Location: 8736-9365 bp Feature: gene Location: 9400-10722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9688-10345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9688-103 45 bp Feature: domain Description: GIIM Note: maturase Location: 10414-10627 bp Feature: domain Description: GIIM Note: maturase Location: 10414-10627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LMZF01000098.1 Rhizobium leucaenae strain CPAO 29.8 contig00142, whole genome shotgun sequence (9796 bp)
Overview 1 RT 1: 4847-8860 bp Neighborhood of RT #1 [4847, 8925] RVT-GII GIIM AccC Feature: gene Location: 4847-5137 bp Feature: gene Location: 5376-5651 bp Feature: gene Location: 5868-7118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084-6729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6084 -6729 bp Feature: domain Description: GIIM Note: maturase Location: 6816-7026 bp Feature: domain Description: GIIM Note: maturase Location: 6816-7026 bp Feature: gene Location: 7170-7403 bp Feature: gene Location: 7636-8925 bp Feature: domain Description: AccC Location: 7654-8860 bp Feature: domain Description: AccC Location: 7654 -8860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AccC (COG0439)