myRT

myRT report for GCA_001676085.1_ASM167608v1

Download annotations/find similar RTs

Seq: LZFB01000077.1 Photobacterium aquimaris strain GCSL-P109 CFSAN046812_c_P109_66, whole genome shotgun sequence (2166 bp)
Overview 1 RT 1: 583-1831 bp Neighborhood of RT #1 [583, 2055] RVT_N RVT-GII GIIM Feature: gene Location: 583-2055 bp Ori: OBU15940.1 Feature: domain Description: RVT_N Location: 631-874 bp Feature: domain Description: RVT_N Location: 631 -874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 919-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 9-1 546 bp Feature: domain Description: GIIM Note: maturase Location: 1606-1831 bp Feature: domain Description: GIIM Note: maturase Location: 1 606-1 831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LZFB01000054.1 Photobacterium aquimaris strain GCSL-P109 CFSAN046812_c_P109_45, whole genome shotgun sequence (30634 bp)
Overview 1 RT 1: 325-2156 bp Neighborhood of RT #1 [325, 2170] RVT-UG17 Phage_holin_2_3 lyz_P1 Feature: gene Location: 325-1302 bp Ori: OBU19584.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 331-793 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 331-793 bp Feature: gene Location: 1441-1656 bp Ori: OBU19585.1 Feature: domain Description: Phage_holin_2_3 Location: 1450-1603 bp Feature: domain Description: Phage_holin_2 _3 Location: 1450-1603 bp Feature: gene Location: 1634-2170 bp Ori: OBU19586.1 Feature: domain Description: lyz_P1 Location: 1727-2156 bp Feature: domain Description: lyz_P1 Location: 172 7-2 156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, Phage_holin_2_3 (pfam16080), lyz_P1 (cd16901)

Seq: LZFB01000055.1 Photobacterium aquimaris strain GCSL-P109 CFSAN046812_c_P109_46, whole genome shotgun sequence (27479 bp)
Overview 1 RT 1: 22208-26280 bp Neighborhood of RT #1 [22208, 26504] FUSC Pepdidase_M14_N M14_PaCCP-like RVT_N RVT-GII GIIM Feature: gene Location: 22208-23254 bp Ori: OBU19380.1 Feature: domain Description: FUSC Location: 22250-23024 bp Feature: domain Description: FUSC Location: 22250-23 024 bp Feature: gene Location: 23559-24704 bp Ori: OBU19381.1 Feature: domain Description: Pepdidase_M14_N Location: 23568-23886 bp Feature: domain Description: Pepdidase_M14_N Location: 23 568-23 886 bp Feature: domain Description: M14_PaCCP-like Location: 23895-24675 bp Feature: domain Description: M14_PaCCP-like Location: 23 895-24675 bp Feature: gene Location: 25032-26504 bp Ori: OBU19386.1 Feature: domain Description: RVT_N Location: 25080-25323 bp Feature: domain Description: RVT_N Location: 25080-253 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25368-25995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 68-25995 bp Feature: domain Description: GIIM Note: maturase Location: 26055-26280 bp Feature: domain Description: GIIM Note: maturase Location: 26055-26280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FUSC (pfam04632), Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LZFB01000013.1 Photobacterium aquimaris strain GCSL-P109 CFSAN046812_c_P109_11, whole genome shotgun sequence (130008 bp)
Overview 1 RT 1: 104252-106994 bp Neighborhood of RT #1 [104252, 107011] HTH_XRE RVT-Retrons PRK09738 DUF1525 Feature: gene Location: 104252-104503 bp Feature: gene Location: 104527-104811 bp Ori: OBU25679.1 Feature: domain Description: HTH_XRE Location: 104545-104707 bp Feature: domain Description: HTH_XRE Location: 104 54 5-104 707 bp Feature: gene Location: 104795-105751 bp Ori: OBU25680.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104936-105488 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104 936-1054 88 bp Feature: gene Location: 105948-106097 bp Ori: OBU25705.1 Feature: domain Description: PRK09738 Location: 105951-106092 bp Feature: domain Description: PRK09738 Location: 105951-106092 bp Feature: gene Location: 106553-107011 bp Ori: OBU25681.1 Feature: domain Description: DUF1525 Location: 106676-106994 bp Feature: domain Description: DUF1525 Location: 106676-106994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK09738 (small toxic polypeptide; Provisional), DUF1525 (pfam07511)

Seq: LZFB01000060.1 Photobacterium aquimaris strain GCSL-P109 CFSAN046812_c_P109_50, whole genome shotgun sequence (20484 bp)
Overview 1 RT 1: 194-4340 bp Neighborhood of RT #1 [194, 4504] BrnA_antitoxin COG2929 RVT-UG2 SR_Res_par Feature: gene Location: 194-403 bp Ori: OBU18113.1 Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: gene Location: 396-692 bp Ori: OBU18114.1 Feature: domain Description: COG2929 Location: 411-678 bp Feature: domain Description: COG2929 Location: 411-678 bp Feature: gene Location: 1085-2395 bp Ori: OBU18115.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: gene Location: 2742-3686 bp Feature: gene Location: 3905-4504 bp Ori: OBU18117.1 Feature: domain Description: SR_Res_par Location: 3914-4340 bp Feature: domain Description: SR_Res_par Location: 3914-4340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnA_antitoxin (pfam14384), COG2929 (Uncharacterized conserved protein, DUF497 family ), RVT-UG2, SR_Res_par (cd03767)