myRT

myRT report for GCA_001676585.1_ASM167658v1

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Seq: LYXA01000001.1 Cylindrospermopsis raciborskii CS-505 strain CS505 CYLCS505_contig000001, whole genome shotgun sequence (4011384 bp)
Overview 1 RT 1: 511983-514681 bp 2 RT 2: 2391387-2396468 bp 3 RT 3: 2626402-2633804 bp 4 RT 4: 2712138-2718653 bp Neighborhood of RT #1 [511983, 514692] CpeS RVT_N RVT-GII RVT-GII GIIM CpeS cyt_b559_alpha Neighborhood of RT #2 [2391387, 2396530] DUF3157 RVT_N RVT-GII GIIM QueC MviM Neighborhood of RT #3 [2626402, 2633824] DUF3598 RTPR RVT-GII GIIM RNR_II_monomer PRK05192 Neighborhood of RT #4 [2712138, 2718655] TRX_NTR KOG0404 TRX_NTR RVT_N RVT-GII GIIM N_methyl Pilin_GH DUF4327 Feature: gene Location: 511983-512249 bp Feature: domain Description: CpeS Location: 511989-512217 bp Feature: domain Description: CpeS Location: 51 1 989-51 221 7 bp Feature: gene Location: 512246-512425 bp Feature: gene Location: 512773-513873 bp Feature: RT Description: RVT_N Location: 512809-512980 bp Feature: RT Description: RVT_N Location: 51 2809-51 2980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 513001-513355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 3001 -51 3355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 513355-513520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 3355-51 3520 bp Feature: domain Description: GIIM Note: maturase Location: 513580-513772 bp Feature: domain Description: GIIM Note: maturase Location: 51 3580-51 3772 bp Feature: gene Location: 514036-514290 bp Feature: domain Description: CpeS Location: 514039-514237 bp Feature: domain Description: CpeS Location: 51 4039-51 4237 bp Feature: gene Location: 514444-514692 bp Feature: domain Description: cyt_b559_alpha Location: 514450-514681 bp Feature: domain Description: cyt_b559_alpha Location: 51 4450-51 4681 bp Feature: gene Location: 2391387-2392091 bp Feature: domain Description: DUF3157 Location: 2391768-2391915 bp Feature: domain Description: DUF31 57 Location: 2391 768-2391 91 5 bp Feature: gene Location: 2392406-2392606 bp Feature: gene Location: 2392753-2394453 bp Feature: RT Description: RVT_N Location: 2392780-2392990 bp Feature: RT Description: RVT_N Location: 2392780-2392990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2393044-2393725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2393044-2393725 bp Feature: domain Description: GIIM Note: maturase Location: 2393824-2394058 bp Feature: domain Description: GIIM Note: maturase Location: 2393824-2394058 bp Feature: gene Location: 2394586-2395254 bp Feature: domain Description: QueC Location: 2394589-2395246 bp Feature: domain Description: QueC Location: 2394589-2395246 bp Feature: gene Location: 2395451-2396530 bp Feature: domain Description: MviM Location: 2395517-2396468 bp Feature: domain Description: MviM Location: 239551 7-2396468 bp Feature: gene Location: 2626402-2627256 bp Feature: domain Description: DUF3598 Location: 2626411-2627242 bp Feature: domain Description: DUF3598 Location: 262641 1 -2627242 bp Feature: gene Location: 2627286-2629244 bp Feature: domain Description: RTPR Location: 2627289-2629218 bp Feature: domain Description: RTPR Location: 2627289-262921 8 bp Feature: gene Location: 2629425-2630633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629572-2630169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629572-26301 69 bp Feature: domain Description: GIIM Note: maturase Location: 2630256-2630490 bp Feature: domain Description: GIIM Note: maturase Location: 2630256-2630490 bp Feature: gene Location: 2631272-2631535 bp Feature: domain Description: RNR_II_monomer Location: 2631335-2631530 bp Feature: domain Description: RNR_II_monomer Location: 2631 335-2631 530 bp Feature: gene Location: 2631884-2633824 bp Feature: domain Description: PRK05192 Location: 2631944-2633804 bp Feature: domain Description: PRK051 92 Location: 2631 944-2633804 bp Feature: gene Location: 2712138-2712362 bp Feature: domain Description: TRX_NTR Location: 2712141-2712357 bp Feature: domain Description: TRX_NTR Location: 271 21 41 -271 2357 bp Feature: gene Location: 2713482-2714636 bp Feature: domain Description: KOG0404 Location: 2713485-2714217 bp Feature: domain Description: KOG0404 Location: 271 3485-271 421 7 bp Feature: domain Description: TRX_NTR Location: 2714337-2714622 bp Feature: domain Description: TRX_NTR Location: 271 4337-271 4622 bp Feature: gene Location: 2714702-2716267 bp Feature: RT Description: RVT_N Location: 2714786-2714999 bp Feature: RT Description: RVT_N Location: 271 4786-271 4999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2715044-2715665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 5044-271 5665 bp Feature: domain Description: GIIM Note: maturase Location: 2715788-2716010 bp Feature: domain Description: GIIM Note: maturase Location: 271 5788-271 601 0 bp Feature: gene Location: 2717326-2717850 bp Feature: domain Description: N_methyl Location: 2717386-2717455 bp Feature: domain Description: N_methyl Location: 271 7386-271 7455 bp Feature: domain Description: Pilin_GH Location: 2717491-2717818 bp Feature: domain Description: Pilin_GH Location: 271 7491 -271 781 8 bp Feature: gene Location: 2718437-2718655 bp Feature: domain Description: DUF4327 Location: 2718458-2718653 bp Feature: domain Description: DUF4327 Location: 271 8458-271 8653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpeS (pfam09367), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), cyt_b559_alpha (TIGR01332), DUF3157 (pfam11355), QueC (pfam06508), MviM (COG0673), DUF3598 (pfam12204), RTPR (TIGR02505)
RNR_II_monomer (cd01676), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG), TRX_NTR (cd02949), KOG0404 (KOG0404, Thioredoxin reductase ), N_methyl (pfam07963), Pilin_GH (pfam16734), DUF4327 (pfam14217)