myRT

myRT report for GCA_001684155.1_ASM168415v1

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Seq: LXRH01000045.1 Candidatus Glomeribacter gigasporarum strain JA201A Contig_160, whole genome shotgun sequence (6741 bp)
Overview 1 RT 1: 180-3227 bp Neighborhood of RT #1 [180, 3283] RVT-GII GIIM HNHc MFS_ShiA_like Feature: gene Location: 180-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-51 9 bp Feature: domain Description: GIIM Note: maturase Location: 570-804 bp Feature: domain Description: GIIM Note: maturase Location: 570-804 bp Feature: domain Description: HNHc Note: nucleases Location: 1038-1194 bp Feature: domain Description: HNHc Note: nucleases Location: 1 038-1 1 94 bp Feature: gene Location: 1568-1723 bp Feature: gene Location: 2096-3283 bp Feature: domain Description: MFS_ShiA_like Location: 2102-3227 bp Feature: domain Description: MFS_ShiA_like Location: 21 02-3227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), MFS_ShiA_like (cd17369)

Seq: LXRH01000258.1 Candidatus Glomeribacter gigasporarum strain JA201A Contig_273, whole genome shotgun sequence (1613 bp)
Overview 1 RT 1: 196-1556 bp Neighborhood of RT #1 [196, 1556] RVT-GII Recombinase Feature: gene Location: 196-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250-559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50-559 bp Feature: gene Location: 999-1313 bp Feature: domain Description: Recombinase Location: 1053-1290 bp Feature: domain Description: Recombinase Location: 1053-12 90 bp Feature: gene Location: 1365-1556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Recombinase (pfam07508)

Seq: LXRH01000010.1 Candidatus Glomeribacter gigasporarum strain JA201A Contig_31, whole genome shotgun sequence (12053 bp)
Overview 1 RT 1: 9289-12017 bp Neighborhood of RT #1 [9289, 12017] antidote_CC2985 COG3547 RVT-GII Feature: gene Location: 9289-9555 bp Feature: domain Description: antidote_CC2985 Location: 9295-9505 bp Feature: domain Description: antidote_CC2985 Location: 9295-9505 bp Feature: gene Location: 9733-10692 bp Feature: domain Description: COG3547 Location: 9760-10633 bp Feature: domain Description: COG3 547 Location: 9760-1063 3 bp Feature: gene Location: 10881-11720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10893-11367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10893 -113 67 bp Feature: gene Location: 11829-12017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antidote_CC2985 (TIGR02606), COG3547 (Transposase ), RVT-GII

Seq: LXRH01000057.1 Candidatus Glomeribacter gigasporarum strain JA201A Contig_58, whole genome shotgun sequence (5677 bp)
Overview 1 RT 1: 180-2786 bp Neighborhood of RT #1 [180, 2786] PLDc_N_DEXD_b2 RVT-GII Feature: gene Location: 180-1352 bp Feature: domain Description: PLDc_N_DEXD_b2 Location: 279-639 bp Feature: domain Description: PLDc_N_DEXD_b2 Location: 279-639 bp Feature: gene Location: 1500-1655 bp Feature: gene Location: 1778-1915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781-1907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781-1907 bp Feature: gene Location: 2235-2504 bp Feature: gene Location: 2643-2786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N_DEXD_b2 (cd09204), RVT-GII

Seq: LXRH01000047.1 Candidatus Glomeribacter gigasporarum strain JA201A Contig_72, whole genome shotgun sequence (6531 bp)
Overview 1 RT 1: 3028-5490 bp Neighborhood of RT #1 [3028, 5684] LPD7 RepB_primase RVT-GII group_II_RT_mat Feature: gene Location: 3028-4191 bp Feature: domain Description: LPD7 Location: 3280-3547 bp Feature: domain Description: LPD7 Location: 3280-35 47 bp Feature: domain Description: RepB_primase Location: 3613-4189 bp Feature: domain Description: RepB_primase Location: 3613-4189 bp Feature: gene Location: 4093-4500 bp Feature: gene Location: 4992-5684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5208-5349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 208-5 349 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5361-5490 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 5 361-5 490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD7 (pfam18821), RepB_primase (pfam16793), RVT-GII, group_II_RT_mat (TIGR04416)