myRT

myRT report for GCA_001684175.1_ASM168417v1

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Seq: LXRI01000011.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_128, whole genome shotgun sequence (13771 bp)
Overview 1 RT 1: 11792-13702 bp Neighborhood of RT #1 [11792, 13740] RPA RVT-GII Feature: gene Location: 11792-12775 bp Feature: domain Description: RPA Location: 12029-12626 bp Feature: domain Description: RPA Location: 1 2029-1 2626 bp Feature: gene Location: 12847-13026 bp Feature: gene Location: 13174-13740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13357-13702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3357-1 3702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RPA (pfam10134), RVT-GII

Seq: LXRI01000097.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_152, whole genome shotgun sequence (3509 bp)
Overview 1 RT 1: 1493-3451 bp Neighborhood of RT #1 [1493, 3465] COG3547 RVT-GII Feature: gene Location: 1493-2260 bp Feature: domain Description: COG3547 Location: 1508-2207 bp Feature: domain Description: COG3547 Location: 1508-2 2 07 bp Feature: gene Location: 2927-3055 bp Feature: gene Location: 3064-3465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112-3451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112 -3451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII

Seq: LXRI01000026.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_177, whole genome shotgun sequence (10044 bp)
Overview 1 RT 1: 595-4446 bp Neighborhood of RT #1 [595, 4475] T_den_put_tspse RVT_N RVT-GII GIIM HNHc PRK15075 Feature: gene Location: 595-774 bp Feature: gene Location: 869-1156 bp Feature: domain Description: T_den_put_tspse Location: 920-1145 bp Feature: domain Description: T_den_put_tspse Location: 920-1145 bp Feature: gene Location: 1246-2958 bp Feature: domain Description: RVT_N Location: 1294-1537 bp Feature: domain Description: RVT_N Location: 1294-153 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582-2215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1582-2215 bp Feature: domain Description: GIIM Note: maturase Location: 2278-2512 bp Feature: domain Description: GIIM Note: maturase Location: 2278-2512 bp Feature: domain Description: HNHc Note: nucleases Location: 2740-2890 bp Feature: domain Description: HNHc Note: nucleases Location: 2740-2890 bp Feature: gene Location: 3434-4201 bp Feature: gene Location: 4290-4475 bp Feature: domain Description: PRK15075 Location: 4302-4446 bp Feature: domain Description: PRK15075 Location: 43 02-4446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK15075 (tricarballylate/proton symporter TcuC)

Seq: LXRI01000062.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_185, whole genome shotgun sequence (5418 bp)
Overview 1 RT 1: 81-3135 bp Neighborhood of RT #1 [81, 3146] RVT-GII RVT-GII HSDR_N_2 HsdM Feature: gene Location: 81-710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318-705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318-705 bp Feature: gene Location: 826-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1000 bp Feature: gene Location: 1232-1519 bp Feature: gene Location: 1794-3146 bp Feature: domain Description: HSDR_N_2 Location: 1935-2238 bp Feature: domain Description: HSDR_N_2 Location: 1935-2238 bp Feature: domain Description: HsdM Location: 2676-3135 bp Feature: domain Description: HsdM Location: 2676-3135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HSDR_N_2 (pfam13588), HsdM (COG0286)

Seq: LXRI01000085.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_201, whole genome shotgun sequence (4080 bp)
Overview 1 RT 1: 41-3049 bp Neighborhood of RT #1 [41, 3063] RVT-GII RVT-GII GIIM DUF1640 ANT Feature: gene Location: 41-289 bp Feature: gene Location: 321-515 bp Feature: gene Location: 768-1091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1089 bp Feature: gene Location: 1117-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1156-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115 6-1441 bp Feature: domain Description: GIIM Note: maturase Location: 1525-1756 bp Feature: domain Description: GIIM Note: maturase Location: 15 25 -175 6 bp Feature: gene Location: 2094-2447 bp Feature: domain Description: DUF1640 Location: 2118-2298 bp Feature: domain Description: DUF1640 Location: 2118-2298 bp Feature: gene Location: 2692-3063 bp Feature: domain Description: ANT Location: 2752-3049 bp Feature: domain Description: ANT Location: 275 2-3049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF1640 (pfam07798), ANT (pfam03374)

Seq: LXRI01000069.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_286, whole genome shotgun sequence (5022 bp)
Overview 1 RT 1: 1932-5021 bp Neighborhood of RT #1 [1932, 5021] Phage_int_SAM_5 INT_Rci_Hp1_C COG4190 RVT-GII Feature: gene Location: 1932-2858 bp Feature: domain Description: Phage_int_SAM_5 Location: 2016-2262 bp Feature: domain Description: Phage_int_SAM_5 Location: 2016 -226 2 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2310-2796 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2310-2796 bp Feature: gene Location: 2879-3313 bp Feature: domain Description: COG4190 Location: 2936-3215 bp Feature: domain Description: COG4190 Location: 2936 -3215 bp Feature: gene Location: 3551-4210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788-4175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788-4175 bp Feature: gene Location: 4869-5021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_5 (pfam13102), INT_Rci_Hp1_C (cd00796), COG4190 (Predicted transcriptional regulator ), RVT-GII

Seq: LXRI01000173.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_56, whole genome shotgun sequence (1840 bp)
Overview 1 RT 1: 2-1766 bp Neighborhood of RT #1 [2, 1837] AbiEii RVT-GII RVT-UNC Feature: gene Location: 2-256 bp Feature: gene Location: 330-803 bp Feature: domain Description: AbiEii Location: 417-675 bp Feature: domain Description: AbiEii Location: 417 -67 5 bp Feature: gene Location: 1045-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063-1222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063-1222 bp Feature: gene Location: 1562-1837 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1583-1766 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1583-17 66 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-GII, RVT-GII/RVT-CRISPR/RVT-UG17(RVT-UNC)

Seq: LXRI01000001.1 Candidatus Glomeribacter gigasporarum strain IN211 Contig_92, whole genome shotgun sequence (35260 bp)
Overview 1 RT 1: 57-3448 bp Neighborhood of RT #1 [57, 3546] RVT-GII RVT-GII COG4190 Feature: gene Location: 57-341 bp Feature: gene Location: 591-806 bp Feature: gene Location: 825-1454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062-1449 bp Feature: gene Location: 1570-1947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-1744 bp Feature: gene Location: 1976-2263 bp Feature: gene Location: 3112-3546 bp Feature: domain Description: COG4190 Location: 3169-3448 bp Feature: domain Description: COG4190 Location: 3169-3448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4190 (Predicted transcriptional regulator )

Seq: LXRI01000114.1 Candidatus Glomeribacter gigasporarum strain IN211 NODE_5989, whole genome shotgun sequence (3017 bp)
Overview 1 RT 1: 777-2948 bp Neighborhood of RT #1 [777, 2986] RPA RVT-GII Feature: gene Location: 777-2021 bp Feature: domain Description: RPA Location: 1275-1872 bp Feature: domain Description: RPA Location: 1275-1872 bp Feature: gene Location: 2093-2272 bp Feature: gene Location: 2420-2986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603-2948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603-29 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RPA (pfam10134), RVT-GII