myRT

myRT report for GCA_001685175.1_ASM168517v1

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Seq: MBAF01000034.1 Clostridium beijerinckii strain BGS1 Scaffold31, whole genome shotgun sequence (50569 bp)
Overview 1 RT 1: 39936-46960 bp Neighborhood of RT #1 [39936, 47205] MdlB SgrR_N PBP2_SgrR_like RVT-GII GIIM AcrR PanE Feature: gene Location: 39936-41690 bp Feature: domain Description: MdlB Location: 39942-41655 bp Feature: domain Description: MdlB Location: 39942-41 655 bp Feature: gene Location: 41944-43758 bp Feature: domain Description: SgrR_N Location: 41953-42259 bp Feature: domain Description: SgrR_N Location: 41 953-42259 bp Feature: domain Description: PBP2_SgrR_like Location: 42334-43741 bp Feature: domain Description: PBP2_SgrR_like Location: 42334-43741 bp Feature: gene Location: 44519-45223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44537-44867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44537-44867 bp Feature: domain Description: GIIM Note: maturase Location: 44927-45143 bp Feature: domain Description: GIIM Note: maturase Location: 44927-451 43 bp Feature: gene Location: 45594-46145 bp Feature: domain Description: AcrR Location: 45615-45807 bp Feature: domain Description: AcrR Location: 4561 5-45807 bp Feature: gene Location: 46297-47205 bp Feature: domain Description: PanE Location: 46318-46960 bp Feature: domain Description: PanE Location: 4631 8-46960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), SgrR_N (pfam12793), PBP2_SgrR_like (cd08507), RVT-GII, GIIM (pfam08388), AcrR (COG1309), PanE (COG1893)

Seq: MBAF01000032.1 Clostridium beijerinckii strain BGS1 Scaffold3, whole genome shotgun sequence (352550 bp)
Overview 1 RT 1: 344351-349621 bp Neighborhood of RT #1 [344351, 349623] CcmA OmpR RVT-GII PRK14499 MogA_MoaB moaA Feature: gene Location: 344351-345274 bp Feature: domain Description: CcmA Location: 344357-345254 bp Feature: domain Description: CcmA Location: 344357-3452 54 bp Feature: gene Location: 345418-346098 bp Feature: domain Description: OmpR Location: 345430-346093 bp Feature: domain Description: OmpR Location: 345430-346093 bp Feature: gene Location: 346519-347004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346537-347005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346537-347005 bp Feature: gene Location: 347716-348651 bp Feature: domain Description: PRK14499 Location: 347722-348139 bp Feature: domain Description: PRK14499 Location: 34772 2 -348139 bp Feature: domain Description: MogA_MoaB Location: 348169-348616 bp Feature: domain Description: MogA_MoaB Location: 348169-348616 bp Feature: gene Location: 348655-349623 bp Feature: domain Description: moaA Location: 348658-349621 bp Feature: domain Description: moaA Location: 348658-34962 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), OmpR (COG0745), RVT-GII, PRK14499 (cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein), MogA_MoaB (cd00886), moaA (TIGR02666)

Seq: MBAF01000041.1 Clostridium beijerinckii strain BGS1 Scaffold38, whole genome shotgun sequence (38813 bp)
Overview 1 RT 1: 31361-36291 bp Neighborhood of RT #1 [31361, 36299] PksD PksD PHA02517 RVT_N RVT-GII GIIM PHA02517 InsE Feature: gene Location: 31361-32944 bp Feature: domain Description: PksD Location: 31367-32204 bp Feature: domain Description: PksD Location: 3 13 67-3 2204 bp Feature: domain Description: PksD Location: 32669-32837 bp Feature: domain Description: PksD Location: 3 2669-3 283 7 bp Feature: gene Location: 32997-33272 bp Feature: domain Description: PHA02517 Location: 33000-33249 bp Feature: domain Description: PHA02517 Location: 3 3 000-3 3 249 bp Feature: gene Location: 33367-34848 bp Feature: RT Description: RVT_N Location: 33439-33682 bp Feature: RT Description: RVT_N Location: 3 3 43 9-3 3 682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33727-34387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 727-3 43 87 bp Feature: domain Description: GIIM Note: maturase Location: 34438-34675 bp Feature: domain Description: GIIM Note: maturase Location: 3 443 8-3 4675 bp Feature: gene Location: 35374-35916 bp Feature: domain Description: PHA02517 Location: 35383-35896 bp Feature: domain Description: PHA02517 Location: 3 53 83 -3 5896 bp Feature: gene Location: 35979-36299 bp Feature: domain Description: InsE Location: 35985-36291 bp Feature: domain Description: InsE Location: 3 5985-3 6291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PksD (COG3321), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsE (COG2963)