myRT

myRT report for GCA_001687785.1_ASM168778v1

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Seq: LYEG01000076.1 Shigella sonnei strain CDPH_C43 contig167, whole genome shotgun sequence (5998 bp)
Overview 1 RT 1: 1-2679 bp Neighborhood of RT #1 [1, 2714] HTH_23 RVT-GII DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-184 bp Feature: domain Description: HTH_23 Location: 34-118 bp Feature: domain Description: HTH_23 Location: 34-1 1 8 bp Feature: gene Location: 709-1940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 0-1 372 bp Feature: gene Location: 2059-2202 bp Ori: OCC93239.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 2068-2179 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2068-21 79 bp Feature: gene Location: 2229-2714 bp Ori: OCC93240.1 Feature: domain Description: COG3547 Location: 2247-2679 bp Feature: domain Description: COG3547 Location: 2247-2679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-GII, DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LYEG01000325.1 Shigella sonnei strain CDPH_C43 contig391, whole genome shotgun sequence (3097 bp)
Overview 1 RT 1: 1-3064 bp Neighborhood of RT #1 [1, 3064] HTH_23 HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 1-233 bp Feature: domain Description: HTH_23 Location: 79-217 bp Feature: domain Description: HTH_2 3 Location: 79-2 17 bp Feature: gene Location: 377-1045 bp Ori: OCC86738.1 Feature: domain Description: HTH_23 Location: 485-572 bp Feature: domain Description: HTH_2 3 Location: 485-572 bp Feature: domain Description: InsE Location: 701-896 bp Feature: domain Description: InsE Location: 701-896 bp Feature: gene Location: 1139-1453 bp Ori: OCC86741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1142-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1142 -142 7 bp Feature: gene Location: 1556-1759 bp Ori: OCC86739.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-1754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-1754 bp Feature: gene Location: 1785-2567 bp Feature: domain Description: DDE_Tnp_1 Location: 1791-2499 bp Feature: domain Description: DDE_Tnp_1 Location: 1791-2 499 bp Feature: gene Location: 2843-3064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: LYEG01000239.1 Shigella sonnei strain CDPH_C43 contig313, whole genome shotgun sequence (4709 bp)
Overview 1 RT 1: 429-4371 bp Neighborhood of RT #1 [429, 4541] ushA RVT-GII GIIM RVT-GII Feature: gene Location: 429-2081 bp Ori: OCC88100.1 Gene: ushA Feature: domain Description: ushA Location: 441-2079 bp Feature: domain Description: ushA Location: 441-2079 bp Feature: gene Location: 2050-2235 bp Feature: gene Location: 2588-3175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2630-2798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 0-2798 bp Feature: domain Description: GIIM Note: maturase Location: 2882-3098 bp Feature: domain Description: GIIM Note: maturase Location: 2882-3 098 bp Feature: gene Location: 3414-4541 bp Ori: OCC88102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3714-4371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 714-43 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, GIIM (pfam08388)