myRT

myRT report for GCA_001687795.1_ASM168779v1

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Seq: LYEF01000271.1 Shigella sonnei strain CDPH_C44 contig342, whole genome shotgun sequence (3401 bp)
Overview 1 RT 1: 159-2846 bp Neighborhood of RT #1 [159, 2846] HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 159-827 bp Ori: OCC87017.1 Feature: domain Description: HTH_23 Location: 267-354 bp Feature: domain Description: HTH_23 Location: 267-354 bp Feature: domain Description: InsE Location: 483-678 bp Feature: domain Description: InsE Location: 483-678 bp Feature: gene Location: 921-1235 bp Ori: OCC87021.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1 209 bp Feature: gene Location: 1338-1541 bp Ori: OCC87018.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1446-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 446-1 536 bp Feature: gene Location: 1567-2349 bp Feature: domain Description: DDE_Tnp_1 Location: 1573-2281 bp Feature: domain Description: DDE_Tnp_1 Location: 1 573-2281 bp Feature: gene Location: 2625-2846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: LYEF01000529.1 Shigella sonnei strain CDPH_C44 contig77, whole genome shotgun sequence (4970 bp)
Overview 1 RT 1: 1-4327 bp Neighborhood of RT #1 [1, 4329] Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-186 bp Feature: domain Description: Tra5 Location: 7-187 bp Feature: domain Description: Tra5 Location: 7-187 bp Feature: gene Location: 217-1344 bp Ori: OCC83111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1174 bp Feature: gene Location: 1583-2170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625-1793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 5-1793 bp Feature: domain Description: GIIM Note: maturase Location: 1877-2093 bp Feature: domain Description: GIIM Note: maturase Location: 1877-2 093 bp Feature: gene Location: 2523-2708 bp Feature: gene Location: 2677-4329 bp Ori: OCC83113.1 Gene: ushA Feature: domain Description: ushA Location: 2689-4327 bp Feature: domain Description: ushA Location: 2 689-432 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: LYEF01000203.1 Shigella sonnei strain CDPH_C44 contig281, whole genome shotgun sequence (5822 bp)
Overview 1 RT 1: 3281-4718 bp Neighborhood of RT #1 [3281, 5286] COG3547 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 3281-3766 bp Ori: OCC88206.1 Feature: domain Description: COG3547 Location: 3299-3731 bp Feature: domain Description: COG3 547 Location: 3 299-3 73 1 bp Feature: gene Location: 3793-3936 bp Ori: OCC88207.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3802-3913 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 802-3 913 bp Feature: gene Location: 4055-5286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4256-4718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4256-4718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII