myRT

myRT report for GCA_001688335.1_ASM168833v1

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Seq: LYEH01000213.1 Shigella sonnei strain CDPH_C42 contig290, whole genome shotgun sequence (4795 bp)
Overview 1 RT 1: 537-4479 bp Neighborhood of RT #1 [537, 4649] ushA RVT-GII GIIM RVT-GII Feature: gene Location: 537-2189 bp Ori: OCD01088.1 Gene: ushA Feature: domain Description: ushA Location: 549-2187 bp Feature: domain Description: ushA Location: 549-21 87 bp Feature: gene Location: 2158-2343 bp Feature: gene Location: 2696-3283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2738-2906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2738-2906 bp Feature: domain Description: GIIM Note: maturase Location: 2990-3206 bp Feature: domain Description: GIIM Note: maturase Location: 2990-3206 bp Feature: gene Location: 3522-4649 bp Ori: OCD01090.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3822-4479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3822-4479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, GIIM (pfam08388)

Seq: LYEH01000117.1 Shigella sonnei strain CDPH_C42 contig203, whole genome shotgun sequence (6201 bp)
Overview 1 RT 1: 1-2703 bp Neighborhood of RT #1 [1, 2738] HTH_23 RVT-GII DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-209 bp Feature: domain Description: HTH_23 Location: 34-118 bp Feature: domain Description: HTH_2 3 Location: 34-118 bp Feature: gene Location: 733-1964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1396 bp Feature: gene Location: 2083-2226 bp Ori: OCD03666.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 2092-2203 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 092 -2 2 03 bp Feature: gene Location: 2253-2738 bp Ori: OCD03667.1 Feature: domain Description: COG3547 Location: 2271-2703 bp Feature: domain Description: COG3547 Location: 2 2 71-2 703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), RVT-GII, DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: LYEH01000263.1 Shigella sonnei strain CDPH_C42 contig335, whole genome shotgun sequence (3333 bp)
Overview 1 RT 1: 207-2894 bp Neighborhood of RT #1 [207, 2894] HTH_23 InsE RVT-GII RVT-GII DDE_Tnp_1 Feature: gene Location: 207-875 bp Ori: OCD00056.1 Feature: domain Description: HTH_23 Location: 315-402 bp Feature: domain Description: HTH_23 Location: 3 15-402 bp Feature: domain Description: InsE Location: 531-726 bp Feature: domain Description: InsE Location: 53 1-726 bp Feature: gene Location: 969-1283 bp Ori: OCD00060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972-1257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 972-1257 bp Feature: gene Location: 1386-1589 bp Ori: OCD00057.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494-1584 bp Feature: gene Location: 1615-2397 bp Feature: domain Description: DDE_Tnp_1 Location: 1621-2329 bp Feature: domain Description: DDE_Tnp_1 Location: 1621-23 29 bp Feature: gene Location: 2673-2894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)