myRT

myRT report for GCA_001688775.1_ASM168877v1

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Seq: LXVT01000155.1 Shigella sonnei strain CDPH_C14 contig238, whole genome shotgun sequence (5930 bp)
Overview 1 RT 1: 3280-5926 bp Neighborhood of RT #1 [3280, 5930] COG3547 DDE_Tnp_IS66_C RVT-GII HTH_23 Feature: gene Location: 3280-3765 bp Ori: OCF13305.1 Feature: domain Description: COG3547 Location: 3298-3730 bp Feature: domain Description: COG3547 Location: 3298-3730 bp Feature: gene Location: 3792-3935 bp Ori: OCF13306.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3801-3912 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3801 -391 2 bp Feature: gene Location: 4054-5285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4255-4717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4255-471 7 bp Feature: gene Location: 5809-5930 bp Feature: domain Description: HTH_23 Location: 5842-5926 bp Feature: domain Description: HTH_23 Location: 5842-5926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, HTH_23 (pfam13384)

Seq: LXVT01000208.1 Shigella sonnei strain CDPH_C14 contig286, whole genome shotgun sequence (2339 bp)
Overview 1 RT 1: 335-2016 bp Neighborhood of RT #1 [335, 2159] DDE_Tnp_1 RVT-GII RVT-GII InsE Feature: gene Location: 335-1117 bp Feature: domain Description: DDE_Tnp_1 Location: 341-1049 bp Feature: domain Description: DDE_Tnp_1 Location: 341-1049 bp Feature: gene Location: 1143-1346 bp Ori: OCF12290.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251-1341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 51-1341 bp Feature: gene Location: 1449-1763 bp Ori: OCF12291.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1452-1737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1452 -1737 bp Feature: gene Location: 1857-2159 bp Ori: OCF12292.1 Feature: domain Description: InsE Location: 1860-2016 bp Feature: domain Description: InsE Location: 1860-2 016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, InsE (COG2963)

Seq: LXVT01000088.1 Shigella sonnei strain CDPH_C14 contig178, whole genome shotgun sequence (4501 bp)
Overview 1 RT 1: 458-4328 bp Neighborhood of RT #1 [458, 4498] ushA RVT-GII GIIM RVT-GII RVT-GII Feature: gene Location: 458-2110 bp Ori: OCF14729.1 Gene: ushA Feature: domain Description: ushA Location: 470-2108 bp Feature: domain Description: ushA Location: 470-2108 bp Feature: gene Location: 2079-2264 bp Feature: gene Location: 2617-3204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2659-2827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2659-2827 bp Feature: domain Description: GIIM Note: maturase Location: 2911-3127 bp Feature: domain Description: GIIM Note: maturase Location: 2911-3 127 bp Feature: gene Location: 3443-4498 bp Ori: OCF14731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3743-3857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 743 -3 857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3863-4328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 863 -43 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ushA (PRK09558), RVT-GII, GIIM (pfam08388)