myRT

myRT report for GCA_001689215.1_ASM168921v1

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Seq: LXVG01000360.1 Shigella sonnei strain CDPH_C82 contig422, whole genome shotgun sequence (727 bp)
Overview 1 RT 1: 49-727 bp Neighborhood of RT #1 [49, 727] RVT-GII Feature: gene Location: 49-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: LXVG01000274.1 Shigella sonnei strain CDPH_C82 contig345, whole genome shotgun sequence (4141 bp)
Overview 1 RT 1: 680-3424 bp Neighborhood of RT #1 [680, 3426] RVT-GII GIIM ushA Feature: gene Location: 680-1267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 722-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 -890 bp Feature: domain Description: GIIM Note: maturase Location: 974-1190 bp Feature: domain Description: GIIM Note: maturase Location: 974-1190 bp Feature: gene Location: 1620-1805 bp Feature: gene Location: 1774-3426 bp Ori: OCE55047.1 Gene: ushA Feature: domain Description: ushA Location: 1786-3424 bp Feature: domain Description: ushA Location: 1786-342 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: LXVG01000062.1 Shigella sonnei strain CDPH_C82 contig154, whole genome shotgun sequence (2554 bp)
Overview 1 RT 1: 307-2348 bp Neighborhood of RT #1 [307, 2497] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 307-1089 bp Feature: domain Description: DDE_Tnp_1 Location: 313-1021 bp Feature: domain Description: DDE_Tnp_1 Location: 3 13 -1021 bp Feature: gene Location: 1115-1318 bp Ori: OCE61106.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223-1313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1223 -13 13 bp Feature: gene Location: 1421-1735 bp Ori: OCE61108.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-1709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1424-1709 bp Feature: gene Location: 1829-2497 bp Ori: OCE61107.1 Feature: domain Description: HTH_23 Location: 1937-2024 bp Feature: domain Description: HTH_23 Location: 193 7-2024 bp Feature: domain Description: InsE Location: 2153-2348 bp Feature: domain Description: InsE Location: 2153 -23 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)

Seq: LXVG01000066.1 Shigella sonnei strain CDPH_C82 contig158, whole genome shotgun sequence (5851 bp)
Overview 1 RT 1: 3406-4843 bp Neighborhood of RT #1 [3406, 5411] COG3547 DDE_Tnp_IS66_C RVT-GII Feature: gene Location: 3406-3891 bp Ori: OCE60981.1 Feature: domain Description: COG3547 Location: 3424-3856 bp Feature: domain Description: COG354 7 Location: 34 24 -3856 bp Feature: gene Location: 3918-4061 bp Ori: OCE60982.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 3927-4038 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3927-4 038 bp Feature: gene Location: 4180-5411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381-4843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 381-4 84 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII