myRT

myRT report for GCA_001690415.1_ASM169041v1

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Seq: LZHK01000114.1 Gilliamella apicola strain Imp1-1 Gilliamella_apicola_Imp1-1_contig74, whole genome shotgun sequence (35501 bp)
Overview 1 RT 1: 1-6790 bp Neighborhood of RT #1 [1, 6795] HTH_Tnp_1 RVT-UG8 rlmL PRK15083 Feature: gene Location: 1-168 bp Feature: domain Description: HTH_Tnp_1 Location: 10-157 bp Feature: domain Description: HTH_Tnp_1 Location: 1 0-1 57 bp Feature: gene Location: 276-2177 bp Ori: OCG52073.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 768-1206 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 768-1 206 bp Feature: gene Location: 2416-4536 bp Ori: OCG52074.1 Feature: domain Description: rlmL Location: 2419-4534 bp Feature: domain Description: rlmL Location: 241 9-4534 bp Feature: gene Location: 4918-6795 bp Ori: OCG52075.1 Feature: domain Description: PRK15083 Location: 4921-6790 bp Feature: domain Description: PRK1 5083 Location: 4921 -6790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), RVT-UG8, rlmL (PRK11783), PRK15083 (PTS system mannitol-specific transporter subunit IICBA; Provisional)

Seq: LZHK01000024.1 Gilliamella apicola strain Imp1-1 Gilliamella_apicola_Imp1-1_contig12, whole genome shotgun sequence (7200 bp)
Overview 1 RT 1: 3688-7175 bp Neighborhood of RT #1 [3688, 7200] rplM rpsI RVT_N RVT-GII HTH_Tnp_1 Feature: gene Location: 3688-4116 bp Ori: OCG56713.1 Feature: domain Description: rplM Location: 3691-4114 bp Feature: domain Description: rplM Location: 3691-4114 bp Feature: gene Location: 4128-4520 bp Ori: OCG56714.1 Feature: domain Description: rpsI Location: 4131-4518 bp Feature: domain Description: rpsI Location: 4131-4518 bp Feature: gene Location: 6090-6916 bp Feature: domain Description: RVT_N Location: 6168-6411 bp Feature: domain Description: RVT_N Location: 6168-6411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6456-6645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6456-6645 bp Feature: gene Location: 6998-7200 bp Feature: domain Description: HTH_Tnp_1 Location: 7019-7175 bp Feature: domain Description: HTH_Tnp_1 Location: 7019-7175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplM (PRK09216), rpsI (PRK00132), RVT_N (pfam13655), RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: LZHK01000135.1 Gilliamella apicola strain Imp1-1 Gilliamella_apicola_Imp1-1_contig93, whole genome shotgun sequence (2618 bp)
Overview 1 RT 1: 193-2619 bp Neighborhood of RT #1 [193, 2618] RVT-UG3 InsE PHA02517 Feature: gene Location: 193-1416 bp Ori: OCG51005.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 484-943 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 484-943 bp Feature: gene Location: 1544-1711 bp Ori: OCG51006.1 Feature: domain Description: InsE Location: 1553-1685 bp Feature: domain Description: InsE Location: 1553 -1685 bp Feature: gene Location: 1836-2618 bp Ori: OCG51007.1 Feature: domain Description: PHA02517 Location: 1923-2619 bp Feature: domain Description: PHA02517 Location: 1923 -2619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)