myRT

myRT report for GCA_001691105.1_ASM169110v1

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Seq: MAJX01000001.1 Aliivibrio fischeri strain ZF73 ZF73_contig_0, whole genome shotgun sequence (159570 bp)
Overview 1 RT 1: 76685-81080 bp Neighborhood of RT #1 [76685, 81091] Fimbrial_K88 Fimbrial_K88 RVT-UG4 Fimbrial_K88 OMP_b-brl OmpA Feature: gene Location: 76685-77434 bp Ori: OCH43069.1 Feature: domain Description: Fimbrial_K88 Location: 76787-77120 bp Feature: domain Description: Fimbrial_K88 Location: 76787-771 20 bp Feature: gene Location: 77489-78253 bp Ori: OCH43070.1 Feature: domain Description: Fimbrial_K88 Location: 77597-78011 bp Feature: domain Description: Fimbrial_K88 Location: 77597-7801 1 bp Feature: gene Location: 78548-79129 bp Ori: OCH43071.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 78809-79127 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 78809-791 27 bp Feature: gene Location: 79335-80081 bp Ori: OCH43072.1 Feature: domain Description: Fimbrial_K88 Location: 79398-79686 bp Feature: domain Description: Fimbrial_K88 Location: 79398-79686 bp Feature: gene Location: 80129-81091 bp Ori: OCH43073.1 Feature: domain Description: OMP_b-brl Location: 80162-80654 bp Feature: domain Description: OMP_b-brl Location: 801 62-80654 bp Feature: domain Description: OmpA Location: 80768-81080 bp Feature: domain Description: OmpA Location: 80768-81 080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Fimbrial_K88 (pfam02432), RVT-UG4, OMP_b-brl (pfam13505), OmpA (pfam00691)

Seq: MAJX01000042.1 Aliivibrio fischeri strain ZF73 ZF73_contig_20, whole genome shotgun sequence (117188 bp)
Overview 1 RT 1: 24112-30313 bp Neighborhood of RT #1 [24112, 30348] PRK10207 AAA_15 AAA_15 RVT-Retrons EcKinase EcKinase SpoU-like Feature: gene Location: 24112-25599 bp Ori: OCH38757.1 Gene: tppB Feature: domain Description: PRK10207 Location: 24124-25567 bp Feature: domain Description: PRK102 07 Location: 2 412 4-2 5567 bp Feature: gene Location: 26148-27488 bp Ori: OCH38758.1 Feature: domain Description: AAA_15 Location: 26157-26367 bp Feature: domain Description: AAA_15 Location: 2 6157-2 6367 bp Feature: domain Description: AAA_15 Location: 26550-26880 bp Feature: domain Description: AAA_15 Location: 2 6550-2 6880 bp Feature: gene Location: 27485-28456 bp Ori: OCH38759.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27608-28169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 7608-2 8169 bp Feature: gene Location: 28896-29855 bp Ori: OCH38760.1 Feature: domain Description: EcKinase Location: 29103-29322 bp Feature: domain Description: EcKinase Location: 2 9103-2 932 2 bp Feature: domain Description: EcKinase Location: 29460-29694 bp Feature: domain Description: EcKinase Location: 2 9460-2 9694 bp Feature: gene Location: 29890-30348 bp Ori: OCH38761.1 Feature: domain Description: SpoU-like Location: 29911-30313 bp Feature: domain Description: SpoU-like Location: 2 9911-30313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10207 (dipeptide/tripeptide permease DtpB), AAA_15 (pfam13175), RVT-Retrons, EcKinase (pfam02958), SpoU-like (cd18098)

Seq: MAJX01000003.1 Aliivibrio fischeri strain ZF73 ZF73_contig_10, whole genome shotgun sequence (108707 bp)
Overview 1 RT 1: 14501-20632 bp Neighborhood of RT #1 [14501, 20637] TIGR02646 COG3950 RVT-Retrons RDD PRK15071 Feature: gene Location: 14501-15304 bp Ori: OCH42463.1 Feature: domain Description: TIGR02646 Location: 14603-15107 bp Feature: domain Description: TIGR02646 Location: 14603 -15107 bp Feature: gene Location: 15291-16904 bp Ori: OCH42464.1 Feature: domain Description: COG3950 Location: 15474-16836 bp Feature: domain Description: COG3 950 Location: 15474-1683 6 bp Feature: gene Location: 16907-17854 bp Ori: OCH42465.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17012-17609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17012-17609 bp Feature: gene Location: 19022-19486 bp Ori: OCH42466.1 Feature: domain Description: RDD Location: 19043-19454 bp Feature: domain Description: RDD Location: 19043 -19454 bp Feature: gene Location: 19561-20637 bp Ori: OCH42467.1 Feature: domain Description: PRK15071 Location: 19564-20632 bp Feature: domain Description: PRK15071 Location: 19564-2063 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, RDD (pfam06271), PRK15071 (lipopolysaccharide ABC transporter permease; Provisional)

Seq: MAJX01000016.1 Aliivibrio fischeri strain ZF73 ZF73_contig_111, whole genome shotgun sequence (1657 bp)
Overview 1 RT 1: 337-1324 bp Neighborhood of RT #1 [337, 1620] RVT-UG2 Feature: gene Location: 337-1620 bp Ori: OCH41329.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 544-1324 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 54 4 -1324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2