myRT

myRT report for GCA_001692375.1_ASM169237v1

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Seq: LXKR01000071.1 Serratia sp. 14-2641 AS1G5_54, whole genome shotgun sequence (4850 bp)
Overview 1 RT 1: 1-3468 bp Neighborhood of RT #1 [1, 3470] RVT-UG4 FimA PRK15287 Feature: gene Location: 1-276 bp Feature: gene Location: 600-1400 bp Feature: gene Location: 1434-2405 bp Ori: OCJ23830.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1773-2214 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 773-221 4 bp Feature: gene Location: 2439-2975 bp Ori: OCJ23831.1 Feature: domain Description: FimA Location: 2469-2973 bp Feature: domain Description: FimA Location: 2469-2973 bp Feature: gene Location: 2985-3470 bp Ori: OCJ23835.1 Feature: domain Description: PRK15287 Location: 3012-3468 bp Feature: domain Description: PRK1 5287 Location: 301 2-3468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)

Seq: LXKR01000070.1 Serratia sp. 14-2641 AS1G5_53, whole genome shotgun sequence (5488 bp)
Overview 1 RT 1: 155-3647 bp Neighborhood of RT #1 [155, 5254] RVT_N RVT-GII GIIM HNHc ParB_N_like Feature: gene Location: 155-1837 bp Ori: OCJ23881.1 Feature: domain Description: RVT_N Location: 203-446 bp Feature: domain Description: RVT_N Location: 2 03-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491-1133 bp Feature: domain Description: GIIM Note: maturase Location: 1190-1421 bp Feature: domain Description: GIIM Note: maturase Location: 1190-142 1 bp Feature: domain Description: HNHc Note: nucleases Location: 1631-1793 bp Feature: domain Description: HNHc Note: nucleases Location: 1631-1793 bp Feature: gene Location: 2820-3110 bp Feature: gene Location: 3197-5254 bp Ori: OCJ23883.1 Feature: domain Description: ParB_N_like Location: 3380-3647 bp Feature: domain Description: ParB_N_like Location: 3380-3647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), ParB_N_like (cd16411)

Seq: LXKR01000074.1 Serratia sp. 14-2641 AS1G5_57, whole genome shotgun sequence (4723 bp)
Overview 1 RT 1: 1405-4235 bp Neighborhood of RT #1 [1405, 4235] PRK15287 FimA RVT-UG4 Feature: gene Location: 1405-1866 bp Ori: OCJ23488.1 Feature: domain Description: PRK15287 Location: 1408-1864 bp Feature: domain Description: PRK15287 Location: 1408-1864 bp Feature: gene Location: 1876-2412 bp Ori: OCJ23486.1 Feature: domain Description: FimA Location: 1906-2410 bp Feature: domain Description: FimA Location: 1906-2410 bp Feature: gene Location: 2446-3417 bp Ori: OCJ23489.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2785-3226 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2785-3 226 bp Feature: gene Location: 3453-4235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), FimA (pfam16970), RVT-UG4

Seq: LXKR01000044.1 Serratia sp. 14-2641 AS1G5_3, whole genome shotgun sequence (507770 bp)
Overview 1 RT 1: 471592-475954 bp Neighborhood of RT #1 [471592, 475954] PinE RVT-Retrons Feature: gene Location: 471592-472167 bp Ori: OCJ30814.1 Feature: domain Description: PinE Location: 471595-472138 bp Feature: domain Description: PinE Location: 4 71595-4 72138 bp Feature: gene Location: 472709-473587 bp Feature: gene Location: 473847-474776 bp Ori: OCJ30815.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 474003-474552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 74 003-4 74 552 bp Feature: gene Location: 474816-475172 bp Feature: gene Location: 475184-475954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-Retrons

Seq: LXKR01000057.1 Serratia sp. 14-2641 AS1G5_41, whole genome shotgun sequence (10952 bp)
Overview 1 RT 1: 2562-5910 bp Neighborhood of RT #1 [2562, 6274] PHA02517 RVT-GII PHA02517 Feature: gene Location: 2562-2792 bp Ori: OCJ27560.1 Feature: domain Description: PHA02517 Location: 2571-2787 bp Feature: domain Description: PHA025 17 Location: 25 71-2787 bp Feature: gene Location: 3770-4036 bp Feature: gene Location: 4254-5619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4512-4686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 12-4686 bp Feature: gene Location: 5817-6274 bp Feature: domain Description: PHA02517 Location: 5820-5910 bp Feature: domain Description: PHA025 17 Location: 5 820-5 910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: LXKR01000009.1 Serratia sp. 14-2641 AS1G5_13, whole genome shotgun sequence (189603 bp)
Overview 1 RT 1: 13790-18677 bp Neighborhood of RT #1 [13790, 18790] PucG PRK09290 RVT-GII STAS_anti-anti-sigma_factors GCD1 Feature: gene Location: 13790-15031 bp Ori: OCJ42125.1 Feature: domain Description: PucG Location: 13829-15017 bp Feature: domain Description: PucG Location: 13829-15017 bp Feature: gene Location: 15031-16317 bp Ori: OCJ42126.1 Feature: domain Description: PRK09290 Location: 15067-16264 bp Feature: domain Description: PRK09290 Location: 1506 7-16 26 4 bp Feature: gene Location: 16396-16635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16444-16606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 444-16 6 06 bp Feature: gene Location: 17260-17592 bp Ori: OCJ42127.1 Feature: domain Description: STAS_anti-anti-sigma_factors Location: 17272-17557 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 17272-17557 bp Feature: gene Location: 17627-18790 bp Ori: OCJ42128.1 Feature: domain Description: GCD1 Location: 17630-18677 bp Feature: domain Description: GCD1 Location: 176 30-186 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PucG (COG0075), PRK09290 (allantoate amidohydrolase; Reviewed), RVT-GII, STAS_anti-anti-sigma_factors (cd07043), GCD1 (COG1208)