myRT

myRT report for GCA_001692695.1_ASM169269v1

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Seq: MBRB01000012.1 Bacteroides fragilis strain JIM10 contig00012, whole genome shotgun sequence (183145 bp)
Overview 1 RT 1: 112868-119942 bp Neighborhood of RT #1 [112868, 120379] RteC Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII GIIM HTH_17 TOPRIM_primases AAA_25 Feature: gene Location: 112868-113719 bp Ori: OCJ76215.1 Feature: domain Description: RteC Location: 113060-113714 bp Feature: domain Description: RteC Location: 1 1 3060-1 1 371 4 bp Feature: gene Location: 114189-115400 bp Ori: OCJ76216.1 Feature: domain Description: Arm-DNA-bind_5 Location: 114222-114465 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 1 4222-1 1 4465 bp Feature: domain Description: Phage_int_SAM_5 Location: 114513-114831 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 1 451 3-1 1 4831 bp Feature: domain Description: INTN1_C_like Location: 114870-115350 bp Feature: domain Description: INTN1 _C_like Location: 1 1 4870-1 1 5350 bp Feature: gene Location: 116483-117748 bp Ori: OCJ76279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116693-117350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6693-1 1 7350 bp Feature: domain Description: GIIM Note: maturase Location: 117431-117638 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 7431 -1 1 7638 bp Feature: gene Location: 118006-118350 bp Ori: OCJ76217.1 Feature: domain Description: HTH_17 Location: 118123-118270 bp Feature: domain Description: HTH_1 7 Location: 1 1 81 23-1 1 8270 bp Feature: gene Location: 118334-120379 bp Ori: OCJ76218.1 Feature: domain Description: TOPRIM_primases Location: 119033-119264 bp Feature: domain Description: TOPRIM_primases Location: 1 1 9033-1 1 9264 bp Feature: domain Description: AAA_25 Location: 119474-119942 bp Feature: domain Description: AAA_25 Location: 1 1 9474-1 1 9942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RteC (pfam09357), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, GIIM (pfam08388), HTH_17 (pfam12728), TOPRIM_primases (cd01029), AAA_25 (pfam13481)

Seq: MBRB01000006.1 Bacteroides fragilis strain JIM10 contig00006, whole genome shotgun sequence (259920 bp)
Overview 1 RT 1: 103258-112216 bp Neighborhood of RT #1 [103258, 112224] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103258-105447 bp Ori: OCJ77140.1 Feature: domain Description: GlnA3 Location: 103330-105445 bp Feature: domain Description: GlnA3 Location: 103330-105445 bp Feature: gene Location: 105687-107906 bp Feature: gene Location: 108113-109225 bp Ori: OCJ77142.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108428-108977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10842 8-108977 bp Feature: gene Location: 109367-111160 bp Ori: OCJ77143.1 Feature: domain Description: rpsA Location: 109445-111053 bp Feature: domain Description: rpsA Location: 109445-111053 bp Feature: gene Location: 111310-112224 bp Ori: OCJ77144.1 Feature: domain Description: RNase_Z Location: 111325-112216 bp Feature: domain Description: RNase_Z Location: 11132 5-112 2 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: MBRB01000025.1 Bacteroides fragilis strain JIM10 contig00025, whole genome shotgun sequence (66074 bp)
Overview 1 RT 1: 892-5900 bp Neighborhood of RT #1 [892, 5900] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Feature: gene Location: 892-2259 bp Feature: gene Location: 2256-3311 bp Ori: OCJ74846.1 Feature: domain Description: NHL Location: 2478-2844 bp Feature: domain Description: NHL Location: 2478-2844 bp Feature: domain Description: 7WD40 Location: 2895-3276 bp Feature: domain Description: 7WD40 Location: 2895-3 276 bp Feature: gene Location: 4161-4511 bp Ori: OCJ74847.1 Feature: domain Description: RVT_N Location: 4164-4362 bp Feature: domain Description: RVT_N Location: 4164-43 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4416-4485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4416-4485 bp Feature: gene Location: 4489-4686 bp Ori: OCJ74848.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4492-4684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4492-4684 bp Feature: gene Location: 4807-5097 bp Ori: OCJ74849.1 Feature: domain Description: HTH_28 Location: 4831-4978 bp Feature: domain Description: HTH_28 Location: 483 1-4978 bp Feature: gene Location: 5526-5900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518)