myRT

myRT report for GCA_001693485.1_ASM169348v1

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Seq: MAXC01000018.1 Bradyrhizobium sp. LMTR 3 NODE_25, whole genome shotgun sequence (64206 bp)
Overview 1 RT 1: 39025-43272 bp 2 RT 2: 52501-58895 bp Neighborhood of RT #1 [39025, 43424] LysR_substrate DDE_Tnp_IS66 RVT-GII GIIM PRK07475 DUF4096 Neighborhood of RT #2 [52501, 58895] HVD carb_red_sniffer_like_SDR_c RVT-GII GIIM IS285 Feature: gene Location: 39025-39913 bp Feature: domain Description: LysR_substrate Location: 39289-39622 bp Feature: domain Description: LysR_substrate Location: 39289-39622 bp Feature: gene Location: 39958-40197 bp Feature: domain Description: DDE_Tnp_IS66 Location: 39961-40165 bp Feature: domain Description: DDE_Tnp_IS66 Location: 39961 -401 65 bp Feature: gene Location: 40576-41274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40585-41035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40585-41 035 bp Feature: domain Description: GIIM Note: maturase Location: 41122-41257 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 22-41 257 bp Feature: gene Location: 41773-42168 bp Feature: domain Description: PRK07475 Location: 41776-42163 bp Feature: domain Description: PRK07475 Location: 41 776-421 63 bp Feature: gene Location: 43035-43424 bp Feature: domain Description: DUF4096 Location: 43053-43272 bp Feature: domain Description: DUF4096 Location: 43053-43272 bp Feature: gene Location: 52501-52755 bp Feature: domain Description: HVD Location: 52504-52750 bp Feature: domain Description: HVD Location: 52504-52750 bp Feature: gene Location: 53900-54631 bp Feature: domain Description: carb_red_sniffer_like_SDR_c Location: 53912-54629 bp Feature: domain Description: carb_red_sniffer_like_SDR_c Location: 5391 2-54629 bp Feature: gene Location: 55229-56602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55565-56174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55565-561 74 bp Feature: domain Description: GIIM Note: maturase Location: 56222-56447 bp Feature: domain Description: GIIM Note: maturase Location: 56222-56447 bp Feature: gene Location: 57948-58565 bp Feature: domain Description: IS285 Location: 58113-58494 bp Feature: domain Description: IS285 Location: 581 1 3-58494 bp Feature: gene Location: 58554-58895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR_substrate (pfam03466), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), PRK07475 (hypothetical protein; Provisional), DUF4096 (pfam13340), HVD (cd08193), carb_red_sniffer_like_SDR_c (cd05325), IS285 (COG3328)

Seq: MAXC01000053.1 Bradyrhizobium sp. LMTR 3 NODE_8, whole genome shotgun sequence (417824 bp)
Overview 1 RT 1: 87528-91840 bp Neighborhood of RT #1 [87528, 91845] TlpA_like_family TPR_19 TPR_2 RVT-GII GIIM HigA HigB Feature: gene Location: 87528-88622 bp Feature: domain Description: TlpA_like_family Location: 87591-87924 bp Feature: domain Description: TlpA_like_family Location: 87591-8792 4 bp Feature: domain Description: TPR_19 Location: 88050-88158 bp Feature: domain Description: TPR_19 Location: 88050-88158 bp Feature: domain Description: TPR_2 Location: 88398-88467 bp Feature: domain Description: TPR_2 Location: 88398-88467 bp Feature: gene Location: 89214-89411 bp Feature: gene Location: 89611-90852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89803-90418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89803-90418 bp Feature: domain Description: GIIM Note: maturase Location: 90475-90700 bp Feature: domain Description: GIIM Note: maturase Location: 90475-90700 bp Feature: gene Location: 91163-91546 bp Feature: domain Description: HigA Location: 91169-91511 bp Feature: domain Description: HigA Location: 91169-91511 bp Feature: gene Location: 91549-91845 bp Feature: domain Description: HigB Location: 91552-91840 bp Feature: domain Description: HigB Location: 91552 -91840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TlpA_like_family (cd02966), TPR_19 (pfam14559), TPR_2 (pfam07719), RVT-GII, GIIM (pfam08388), HigA (COG5499), HigB (COG4680)