myRT

myRT report for GCA_001695265.1_ASM169526v1

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Seq: LDIR01000001.1 [Arcobacter] porcinus strain 117434 AAX28_contig000001, whole genome shotgun sequence (1193917 bp)
Overview 1 RT 1: 938894-945609 bp Neighborhood of RT #1 [938894, 945611] COG0610 RVT-GII HNHc CspC Feature: gene Location: 938894-941722 bp Ori: OCL93430.1 Gene: hsdR_2 Feature: domain Description: COG0610 Location: 938909-941654 bp Feature: domain Description: COG061 0 Location: 938909-941 654 bp Feature: gene Location: 941825-942010 bp Feature: gene Location: 942312-944177 bp Ori: OCL93432.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942627-943347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942627-943347 bp Feature: domain Description: HNHc Note: nucleases Location: 943926-944061 bp Feature: domain Description: HNHc Note: nucleases Location: 943926-944061 bp Feature: gene Location: 944986-945090 bp Feature: gene Location: 945393-945611 bp Ori: OCL93434.1 Gene: cspA_1 Feature: domain Description: CspC Location: 945408-945609 bp Feature: domain Description: CspC Location: 945408-945609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-GII, HNHc (smart00507), CspC (COG1278)

Seq: LDIR01000003.1 [Arcobacter] porcinus strain 117434 AAX28_contig000003, whole genome shotgun sequence (155601 bp)
Overview 1 RT 1: 31253-34867 bp Neighborhood of RT #1 [31253, 35217] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csx1_III-U Feature: gene Location: 31253-31528 bp Ori: OCL90769.1 Gene: cas2_1 Feature: domain Description: Cas2_I_II_III Location: 31262-31469 bp Feature: domain Description: Cas2 _I_II_III Location: 312 62 -31469 bp Feature: gene Location: 31561-33795 bp Ori: OCL90770.1 Gene: ltrA_2 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 31762-32371 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 31762 -32 371 bp Feature: domain Description: Cas1_I-II-III Location: 32836-33751 bp Feature: domain Description: Cas1_I-II-III Location: 32 836-33751 bp Feature: gene Location: 33785-33913 bp Feature: gene Location: 33973-35217 bp Ori: OCL90772.1 Feature: domain Description: Csx1_III-U Location: 34039-34867 bp Feature: domain Description: Csx1_III-U Location: 34039-34867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csx1_III-U (cl21570)