myRT

myRT report for GCA_001695865.1_LC384_v1

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Seq: MBST01000045.1 Ensifer sp. LC384 contig5, whole genome shotgun sequence (303972 bp)
Overview 1 RT 1: 35815-43174 bp Neighborhood of RT #1 [35815, 43380] RVT-Retrons PRK05298 COG4254 Feature: gene Location: 35815-36315 bp Feature: gene Location: 37232-38002 bp Feature: gene Location: 38063-38953 bp Ori: OCP19051.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 38105-38681 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 381 05-38681 bp Feature: gene Location: 39161-42049 bp Ori: OCP18836.1 Feature: domain Description: PRK05298 Location: 39644-41630 bp Feature: domain Description: PRK05298 Location: 39644-41 630 bp Feature: gene Location: 42379-43380 bp Ori: OCP19052.1 Feature: domain Description: COG4254 Location: 42403-43174 bp Feature: domain Description: COG4254 Location: 42403-431 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK05298 (excinuclease ABC subunit UvrB), COG4254 (Uncharacterized conserved protein, contains LysM and FecR domains )

Seq: MBST01000017.1 Ensifer sp. LC384 contig24, whole genome shotgun sequence (118429 bp)
Overview 1 RT 1: 112802-116071 bp Neighborhood of RT #1 [112802, 116071] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 112802-113146 bp Ori: OCP23626.1 Feature: domain Description: TnpB_IS66 Location: 112826-113111 bp Feature: domain Description: TnpB_IS66 Location: 112 82 6-113111 bp Feature: gene Location: 113222-114286 bp Feature: domain Description: LZ_Tnp_IS66 Location: 113393-113609 bp Feature: domain Description: LZ_Tnp_IS66 Location: 113393-113609 bp Feature: domain Description: zf-IS66 Location: 113639-113744 bp Feature: domain Description: zf-IS66 Location: 113639-113744 bp Feature: domain Description: DDE_Tnp_IS66 Location: 113804-114266 bp Feature: domain Description: DDE_Tnp_IS66 Location: 113804-1142 66 bp Feature: gene Location: 114376-114996 bp Ori: OCP23644.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114385-114640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114385-114640 bp Feature: gene Location: 115165-115692 bp Ori: OCP23627.1 Feature: domain Description: DDE_Tnp_IS66 Location: 115261-115531 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1152 61-115531 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 115552-115666 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 115552 -115666 bp Feature: gene Location: 115700-116071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, DDE_Tnp_IS66_C (pfam13817)