myRT

myRT report for GCA_001695905.1_LC54_v1

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Seq: MBSR01000043.1 Ensifer sp. LC54 contig19, whole genome shotgun sequence (118368 bp)
Overview 1 RT 1: 112741-116010 bp Neighborhood of RT #1 [112741, 116010] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 112741-113085 bp Ori: OCP24313.1 Feature: domain Description: TnpB_IS66 Location: 112765-113050 bp Feature: domain Description: TnpB_IS66 Location: 1 1 2765-1 1 3050 bp Feature: gene Location: 113161-114225 bp Feature: domain Description: LZ_Tnp_IS66 Location: 113332-113548 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 1 3332-1 1 3548 bp Feature: domain Description: zf-IS66 Location: 113578-113683 bp Feature: domain Description: zf-IS66 Location: 1 1 3578-1 1 3683 bp Feature: domain Description: DDE_Tnp_IS66 Location: 113743-114205 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 3743-1 1 4205 bp Feature: gene Location: 114315-114935 bp Ori: OCP24331.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114324-114579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4324-1 1 4579 bp Feature: gene Location: 115104-115631 bp Ori: OCP24314.1 Feature: domain Description: DDE_Tnp_IS66 Location: 115200-115470 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 5200-1 1 5470 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 115491-115605 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 5491 -1 1 5605 bp Feature: gene Location: 115639-116010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, DDE_Tnp_IS66_C (pfam13817)

Seq: MBSR01000001.1 Ensifer sp. LC54 contig1, whole genome shotgun sequence (303438 bp)
Overview 1 RT 1: 35303-42662 bp Neighborhood of RT #1 [35303, 42868] RVT-Retrons PRK05298 COG4254 Feature: gene Location: 35303-35803 bp Feature: gene Location: 36720-37490 bp Feature: gene Location: 37551-38441 bp Ori: OCP28088.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37593-38169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37593-38169 bp Feature: gene Location: 38649-41537 bp Ori: OCP27874.1 Feature: domain Description: PRK05298 Location: 39132-41118 bp Feature: domain Description: PRK052 98 Location: 39132 -41118 bp Feature: gene Location: 41867-42868 bp Ori: OCP28089.1 Feature: domain Description: COG4254 Location: 41891-42662 bp Feature: domain Description: COG42 54 Location: 41891-42 662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK05298 (excinuclease ABC subunit UvrB), COG4254 (Uncharacterized conserved protein, contains LysM and FecR domains )