myRT

myRT report for GCA_001696805.1_ASM169680v1

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Seq: LOMY01000135.1 Photorhabdus australis strain PB68.1 Ppb6_contig000136, whole genome shotgun sequence (11535 bp)
Overview 1 RT 1: 5118-8515 bp Neighborhood of RT #1 [5118, 8547] TNT RVT-GII COG3436 T6SS-SciN Feature: gene Location: 5118-5744 bp Ori: OCQ51421.1 Feature: domain Description: TNT Location: 5472-5736 bp Feature: domain Description: TNT Location: 5472-5736 bp Feature: gene Location: 5745-5972 bp Feature: gene Location: 6463-6720 bp Ori: OCQ51423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6466-6607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6466-6607 bp Feature: gene Location: 6950-7909 bp Ori: OCQ51424.1 Feature: domain Description: COG3436 Location: 7256-7718 bp Feature: domain Description: COG3436 Location: 7256-771 8 bp Feature: gene Location: 8011-8547 bp Ori: OCQ51425.1 Feature: domain Description: T6SS-SciN Location: 8146-8515 bp Feature: domain Description: T6SS-SciN Location: 81 46-851 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TNT (pfam14021), RVT-GII, COG3436 (Transposase ), T6SS-SciN (pfam12790)

Seq: LOMY01000090.1 Photorhabdus australis strain PB68.1 Ppb6_contig000091, whole genome shotgun sequence (33186 bp)
Overview 1 RT 1: 7261-12084 bp Neighborhood of RT #1 [7261, 12101] PRK10901 trkA RVT-GII Phage_int_SAM_4 INT_RitA_C_like Feature: gene Location: 7261-8550 bp Ori: OCQ52186.1 Gene: rsmB Feature: domain Description: PRK10901 Location: 7276-8548 bp Feature: domain Description: PRK10901 Location: 72 76-8548 bp Feature: gene Location: 8607-9983 bp Ori: OCQ52187.1 Gene: trkA Feature: domain Description: trkA Location: 8610-9969 bp Feature: domain Description: trkA Location: 8610-9969 bp Feature: gene Location: 10434-10673 bp Ori: OCQ52188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10437-10563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10437-10563 bp Feature: gene Location: 10934-11572 bp Ori: OCQ52189.1 Feature: domain Description: Phage_int_SAM_4 Location: 11279-11507 bp Feature: domain Description: Phage_int_SAM_4 Location: 112 79-11507 bp Feature: gene Location: 11808-12101 bp Ori: OCQ52190.1 Feature: domain Description: INT_RitA_C_like Location: 11847-12084 bp Feature: domain Description: INT_RitA_C_like Location: 11847-12 084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10901 (16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB), trkA (PRK09496), RVT-GII, Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188)

Seq: LOMY01000170.1 Photorhabdus australis strain PB68.1 Ppb6_contig000171, whole genome shotgun sequence (3061 bp)
Overview 1 RT 1: 147-2867 bp Neighborhood of RT #1 [147, 2881] RVT-GII InsE PHA02517 Feature: gene Location: 147-1229 bp Ori: OCQ51232.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153-846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 -846 bp Feature: gene Location: 2019-2333 bp Ori: OCQ51233.1 Feature: domain Description: InsE Location: 2034-2304 bp Feature: domain Description: InsE Location: 203 4-23 04 bp Feature: gene Location: 2567-2881 bp Ori: OCQ51234.1 Feature: domain Description: PHA02517 Location: 2570-2867 bp Feature: domain Description: PHA02517 Location: 2570-2867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LOMY01000202.1 Photorhabdus australis strain PB68.1 Ppb6_contig000203, whole genome shotgun sequence (219650 bp)
Overview 1 RT 1: 204407-208905 bp Neighborhood of RT #1 [204407, 209081] PRK09692 INT_P4_C RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 204407-205291 bp Ori: OCQ50615.1 Gene: intS_6 Feature: domain Description: PRK09692 Location: 204413-205172 bp Feature: domain Description: PRK09692 Location: 204 4 13-205172 bp Feature: gene Location: 205240-205587 bp Ori: OCQ50616.1 Gene: intA_5 Feature: domain Description: INT_P4_C Location: 205246-205507 bp Feature: domain Description: INT_P4 _C Location: 20524 6-205507 bp Feature: gene Location: 205841-206776 bp Ori: OCQ50617.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 205943-206543 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20594 3-20654 3 bp Feature: gene Location: 206773-208434 bp Ori: OCQ50618.1 Feature: domain Description: COG3950 Location: 206968-208390 bp Feature: domain Description: COG3950 Location: 206968-208390 bp Feature: gene Location: 208431-209081 bp Ori: OCQ50619.1 Feature: domain Description: TIGR02646 Location: 208494-208905 bp Feature: domain Description: TIGR0264 6 Location: 2084 94 -208905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), INT_P4_C (cd00801), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)