myRT

myRT report for GCA_001700025.1_ASM170002v1

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Seq: MBPW01000094.1 Escherichia coli strain 004PP2015 NODE_5_length_277215_cov_61.4534, whole genome shotgun sequence (277215 bp)
Overview 1 RT 1: 1472-6447 bp Neighborhood of RT #1 [1472, 6447] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-UG17 SLATT_5 Feature: gene Location: 1472-3505 bp Ori: OCS67359.1 Feature: domain Description: Phage_fiber_2 Location: 1493-1613 bp Feature: domain Description: Phage_fiber_2 Location: 1 493-1 61 3 bp Feature: domain Description: Collar Location: 2828-2966 bp Feature: domain Description: Collar Location: 2828-2966 bp Feature: domain Description: Phage_fiber Location: 3017-3056 bp Feature: domain Description: Phage_fiber Location: 301 7-3056 bp Feature: domain Description: Phage_fiber Location: 3113-3152 bp Feature: domain Description: Phage_fiber Location: 31 1 3-31 52 bp Feature: domain Description: Phage_fiber Location: 3308-3347 bp Feature: domain Description: Phage_fiber Location: 3308-3347 bp Feature: domain Description: Phage_fiber Location: 3353-3386 bp Feature: domain Description: Phage_fiber Location: 3353-3386 bp Feature: gene Location: 3505-4089 bp Ori: OCS67360.1 Feature: domain Description: Caudo_TAP Location: 3721-4078 bp Feature: domain Description: Caudo_TAP Location: 3721 -4078 bp Feature: gene Location: 4202-5572 bp Ori: OCS67361.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4430-5036 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4430-5036 bp Feature: gene Location: 5550-6101 bp Ori: OCS67362.1 Feature: domain Description: SLATT_5 Location: 5559-6072 bp Feature: domain Description: SLATT_5 Location: 5559-6072 bp Feature: gene Location: 6346-6447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160)

Seq: MBPW01000066.1 Escherichia coli strain 004PP2015 NODE_34_length_23796_cov_74.0641, whole genome shotgun sequence (23796 bp)
Overview 1 RT 1: 14605-23288 bp Neighborhood of RT #1 [14605, 23288] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM Feature: gene Location: 14605-20340 bp Ori: OCS70207.1 Feature: domain Description: DUF4011 Location: 14695-15529 bp Feature: domain Description: DUF4011 Location: 14695-1552 9 bp Feature: domain Description: DEXXQc_SF1 Location: 15886-18988 bp Feature: domain Description: DEXXQc_SF1 Location: 15886-18988 bp Feature: domain Description: SF1_C_Upf1 Location: 18997-19525 bp Feature: domain Description: SF1_C_Upf1 Location: 18997-1952 5 bp Feature: domain Description: MTES_1575 Location: 19654-19945 bp Feature: domain Description: MTES_1575 Location: 19654-19945 bp Feature: gene Location: 20561-20773 bp Ori: OCS70212.1 Feature: domain Description: PHA02517 Location: 20564-20765 bp Feature: domain Description: PHA02 517 Location: 2 0564-2 0765 bp Feature: gene Location: 21100-22608 bp Ori: OCS70208.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21358-22090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1358-2 2 090 bp Feature: domain Description: GIIM Note: maturase Location: 22165-22363 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 165-2 2 363 bp Feature: gene Location: 22577-23002 bp Feature: gene Location: 22917-23288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MBPW01000047.1 Escherichia coli strain 004PP2015 NODE_17_length_125191_cov_63.8784, whole genome shotgun sequence (125191 bp)
Overview 1 RT 1: 105950-111583 bp Neighborhood of RT #1 [105950, 111636] PRK13889 RVT-UG16 DUF4755 Feature: gene Location: 105950-106315 bp Feature: gene Location: 106963-108456 bp Ori: OCS73968.1 Feature: domain Description: PRK13889 Location: 106966-107566 bp Feature: domain Description: PRK13 889 Location: 106966-107566 bp Feature: gene Location: 108594-110078 bp Ori: OCS73969.1 Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 108957-109365 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 108957-1093 65 bp Feature: gene Location: 110178-110728 bp Feature: gene Location: 111163-111636 bp Ori: OCS73970.1 Feature: domain Description: DUF4755 Location: 111280-111583 bp Feature: domain Description: DUF4755 Location: 111280-111583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-UG16, DUF4755 (pfam15947)

Seq: MBPW01000011.1 Escherichia coli strain 004PP2015 NODE_10_length_193574_cov_63.2713, whole genome shotgun sequence (193574 bp)
Overview 1 RT 1: 98329-104238 bp Neighborhood of RT #1 [98329, 104238] HTH_36 RVT-AbiP2 DUF4062 Feature: gene Location: 98329-98754 bp Feature: gene Location: 99665-100174 bp Ori: OCS77329.1 Feature: domain Description: HTH_36 Location: 99851-100007 bp Feature: domain Description: HTH_36 Location: 99851-100007 bp Feature: gene Location: 100382-101881 bp Ori: OCS77330.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100814-101270 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 100814 -101270 bp Feature: gene Location: 102282-103607 bp Ori: OCS77417.1 Feature: domain Description: DUF4062 Location: 102303-102546 bp Feature: domain Description: DUF4 062 Location: 102303-10254 6 bp Feature: gene Location: 103657-104238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_36 (pfam13730), RVT-AbiP2, DUF4062 (pfam13271)