myRT

myRT report for GCA_001700045.1_ASM170004v1

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Seq: MBPU01000041.1 Escherichia coli strain 002PP2015 NODE_40_length_14624_cov_43.2091, whole genome shotgun sequence (14624 bp)
Overview 1 RT 1: 9523-12710 bp Neighborhood of RT #1 [9523, 12710] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM Feature: gene Location: 9523-9915 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9529-9766 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9529-9766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9790-9898 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9790-9898 bp Feature: gene Location: 9959-10345 bp Ori: OCS75295.1 Feature: domain Description: PHA02517 Location: 9962-10343 bp Feature: domain Description: PHA0251 7 Location: 9962-1 0343 bp Feature: gene Location: 10522-12030 bp Ori: OCS75300.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10780-11512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0780-1 1 51 2 bp Feature: domain Description: GIIM Note: maturase Location: 11587-11785 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 587-1 1 785 bp Feature: gene Location: 11999-12424 bp Feature: gene Location: 12339-12710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: MBPU01000067.1 Escherichia coli strain 002PP2015 NODE_64_length_4199_cov_258.035, whole genome shotgun sequence (4199 bp)
Overview 1 RT 1: 154-2510 bp Neighborhood of RT #1 [154, 2533] RVT-Retrons CspC Rop Feature: gene Location: 154-1293 bp Ori: OCS72402.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 298-853 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 98-853 bp Feature: gene Location: 1298-1501 bp Ori: OCS72403.1 Feature: domain Description: CspC Location: 1301-1496 bp Feature: domain Description: CspC Location: 1301-1496 bp Feature: gene Location: 2339-2533 bp Ori: OCS72404.1 Feature: domain Description: Rop Location: 2342-2510 bp Feature: domain Description: Rop Location: 2 342 -2 510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, CspC (COG1278), Rop (pfam01815)