myRT

myRT report for GCA_001700325.1_ASM170032v1

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Seq: MATO01000050.1 Caryophanon latum strain DSM 14151 DSM_14151_R1_001_contig_54, whole genome shotgun sequence (44041 bp)
Overview 1 RT 1: 18714-26336 bp Neighborhood of RT #1 [18714, 26344] PRK04169 pcrA RVT-GII HNHc pcrA ligA Feature: gene Location: 18714-19406 bp Feature: domain Description: PRK04169 Location: 18720-19395 bp Feature: domain Description: PRK041 69 Location: 1 8720-1 9395 bp Feature: gene Location: 19446-20153 bp Feature: domain Description: pcrA Location: 19470-20139 bp Feature: domain Description: pcrA Location: 1 9470-201 39 bp Feature: gene Location: 20920-22719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21178-21913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 78-21 91 3 bp Feature: domain Description: HNHc Note: nucleases Location: 22462-22606 bp Feature: domain Description: HNHc Note: nucleases Location: 22462-22606 bp Feature: gene Location: 22820-24337 bp Feature: domain Description: pcrA Location: 22826-24329 bp Feature: domain Description: pcrA Location: 22826-24329 bp Feature: gene Location: 24347-26344 bp Feature: domain Description: ligA Location: 24353-26336 bp Feature: domain Description: ligA Location: 24353-26336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04169 (heptaprenylglyceryl phosphate synthase), pcrA (TIGR01073), RVT-GII, HNHc (smart00507), ligA (PRK14351)

Seq: MATO01000001.1 Caryophanon latum strain DSM 14151 DSM_14151_R1_001_contig_1, whole genome shotgun sequence (117581 bp)
Overview 1 RT 1: 105207-110325 bp Neighborhood of RT #1 [105207, 110345] PRK13927 PRK00024 RVT-GII Intron_maturas2 HNHc RadC Maf Feature: gene Location: 105207-106226 bp Feature: domain Description: PRK13927 Location: 105216-106215 bp Feature: domain Description: PRK1392 7 Location: 1052 16-1062 15 bp Feature: gene Location: 106604-106873 bp Feature: domain Description: PRK00024 Location: 106670-106868 bp Feature: domain Description: PRK0002 4 Location: 106670-106868 bp Feature: gene Location: 106916-108727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107180-108011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107180-108011 bp Feature: domain Description: Intron_maturas2 Location: 108089-108407 bp Feature: domain Description: Intron_maturas2 Location: 108089-108407 bp Feature: domain Description: HNHc Note: nucleases Location: 108524-108698 bp Feature: domain Description: HNHc Note: nucleases Location: 10852 4-108698 bp Feature: gene Location: 109282-109758 bp Feature: domain Description: RadC Location: 109303-109753 bp Feature: domain Description: RadC Location: 109303-109753 bp Feature: gene Location: 109758-110345 bp Feature: domain Description: Maf Location: 109779-110325 bp Feature: domain Description: Maf Location: 109779-11032 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13927 (rod shape-determining protein MreB; Provisional), PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RadC (pfam04002), Maf (pfam02545)

Seq: MATO01000074.1 Caryophanon latum strain DSM 14151 DSM_14151_R1_001_contig_76, whole genome shotgun sequence (1914 bp)
Overview 1 RT 1: 555-1632 bp Neighborhood of RT #1 [555, 1817] RVT-GII GIIM Feature: gene Location: 555-1817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753 -13 71 bp Feature: domain Description: GIIM Note: maturase Location: 1425-1632 bp Feature: domain Description: GIIM Note: maturase Location: 1425-163 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)