myRT

myRT report for GCA_001700435.1_ASM170043v1

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Seq: LYPC01000027.1 Paenibacillus pectinilyticus strain KCTC13222 scaffold4, whole genome shotgun sequence (1355521 bp)
Overview 1 RT 1: 1226177-1235629 bp Neighborhood of RT #1 [1226177, 1235661] UgpE DUF2961 RVT-GII GIIM DUF2961 DUF2961 RicinB_lectin_2 RicinB_lectin_2 RicinB_lectin_2 RicinB_lectin_2 YesM Feature: gene Location: 1226177-1226995 bp Ori: OCT12790.1 Feature: domain Description: UgpE Location: 1226192-1226990 bp Feature: domain Description: UgpE Location: 1 2261 92-1 226990 bp Feature: gene Location: 1227025-1228116 bp Ori: OCT12582.1 Feature: domain Description: DUF2961 Location: 1227289-1228057 bp Feature: domain Description: DUF2961 Location: 1 227289-1 228057 bp Feature: gene Location: 1228717-1230129 bp Ori: OCT12583.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229068-1229686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 229068-1 229686 bp Feature: domain Description: GIIM Note: maturase Location: 1229740-1229947 bp Feature: domain Description: GIIM Note: maturase Location: 1 229740-1 229947 bp Feature: gene Location: 1230383-1233778 bp Ori: OCT12584.1 Feature: domain Description: DUF2961 Location: 1230734-1230977 bp Feature: domain Description: DUF2961 Location: 1 230734-1 230977 bp Feature: domain Description: DUF2961 Location: 1231235-1231991 bp Feature: domain Description: DUF2961 Location: 1 231 235-1 231 991 bp Feature: domain Description: RicinB_lectin_2 Location: 1232498-1232723 bp Feature: domain Description: RicinB_lectin_2 Location: 1 232498-1 232723 bp Feature: domain Description: RicinB_lectin_2 Location: 1232741-1233020 bp Feature: domain Description: RicinB_lectin_2 Location: 1 232741 -1 233020 bp Feature: domain Description: RicinB_lectin_2 Location: 1233179-1233449 bp Feature: domain Description: RicinB_lectin_2 Location: 1 2331 79-1 233449 bp Feature: domain Description: RicinB_lectin_2 Location: 1233608-1233770 bp Feature: domain Description: RicinB_lectin_2 Location: 1 233608-1 233770 bp Feature: gene Location: 1234012-1235661 bp Ori: OCT12585.1 Feature: domain Description: YesM Location: 1234531-1235629 bp Feature: domain Description: YesM Location: 1 234531 -1 235629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), DUF2961 (pfam11175), RVT-GII, GIIM (pfam08388), RicinB_lectin_2 (pfam14200), YesM (COG2972)

Seq: LYPC01000010.1 Paenibacillus pectinilyticus strain KCTC13222 scaffold11, whole genome shotgun sequence (285325 bp)
Overview 1 RT 1: 178154-186008 bp Neighborhood of RT #1 [178154, 186070] PRK06241 F5_F8_type_C RVT-UG14 RssA RssA DEXQc_UvrD DEXQc_UvrD UvrD Feature: gene Location: 178154-180769 bp Ori: OCT16700.1 Feature: domain Description: PRK06241 Location: 178157-180767 bp Feature: domain Description: PRK062 41 Location: 178157-180767 bp Feature: gene Location: 181044-181460 bp Ori: OCT16701.1 Feature: domain Description: F5_F8_type_C Location: 181122-181428 bp Feature: domain Description: F5_F8_type_C Location: 18112 2 -18142 8 bp Feature: gene Location: 181613-183325 bp Ori: OCT16702.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 181964-182321 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 181964-182 32 1 bp Feature: gene Location: 183432-184952 bp Ori: OCT16703.1 Feature: domain Description: RssA Location: 183471-183648 bp Feature: domain Description: RssA Location: 183471-183648 bp Feature: domain Description: RssA Location: 184005-184260 bp Feature: domain Description: RssA Location: 184005-1842 60 bp Feature: gene Location: 184976-186070 bp Ori: OCT16788.1 Feature: domain Description: DEXQc_UvrD Location: 184994-185147 bp Feature: domain Description: DEXQc_UvrD Location: 184994-185147 bp Feature: domain Description: DEXQc_UvrD Location: 185339-185543 bp Feature: domain Description: DEXQc_UvrD Location: 185339-185543 bp Feature: domain Description: UvrD Location: 185837-186008 bp Feature: domain Description: UvrD Location: 185837-186008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06241 (phosphoenolpyruvate synthase; Validated), F5_F8_type_C (pfam00754), RVT-UG14, RssA (COG1752), DEXQc_UvrD (cd17932), UvrD (COG0210)

Seq: LYPC01000020.1 Paenibacillus pectinilyticus strain KCTC13222 scaffold20, whole genome shotgun sequence (465592 bp)
Overview 1 RT 1: 334424-341356 bp Neighborhood of RT #1 [334424, 341502] Spr ATPgrasp_YheCD RVT-GII RVT-GII GIIM OmpR HTH_40 HTH_Tnp_1 Feature: gene Location: 334424-335376 bp Feature: domain Description: Spr Location: 334964-335231 bp Feature: domain Description: Spr Location: 3 3 4964-3 3 523 1 bp Feature: gene Location: 335401-336168 bp Ori: OCT14389.1 Feature: domain Description: ATPgrasp_YheCD Location: 335407-336130 bp Feature: domain Description: ATPgrasp_YheCD Location: 3 3 5407-3 3 613 0 bp Feature: gene Location: 336933-337769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337353-337770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 73 53 -3 3 7770 bp Feature: gene Location: 338311-339558 bp Ori: OCT14390.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338515-339172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 8515-3 3 9172 bp Feature: domain Description: GIIM Note: maturase Location: 339253-339472 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 9253 -3 3 9472 bp Feature: gene Location: 340237-340593 bp Ori: OCT14391.1 Feature: domain Description: OmpR Location: 340240-340576 bp Feature: domain Description: OmpR Location: 3 40240-3 40576 bp Feature: gene Location: 340765-341502 bp Ori: OCT14392.1 Feature: domain Description: HTH_40 Location: 340972-341263 bp Feature: domain Description: HTH_40 Location: 3 40972-3 41263 bp Feature: domain Description: HTH_Tnp_1 Location: 341293-341356 bp Feature: domain Description: HTH_Tnp_1 Location: 3 41293 -3 413 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), ATPgrasp_YheCD (pfam14398), RVT-GII, GIIM (pfam08388), OmpR (COG0745), HTH_40 (pfam14493), HTH_Tnp_1 (pfam01527)