myRT

myRT report for GCA_001700475.1_ASM170047v1

Download annotations/find similar RTs

Seq: MAKH01000013.1 Lactobacillus crispatus strain C037 C037_Contig_13, whole genome shotgun sequence (16449 bp)
Overview 1 RT 1: 740-2199 bp Neighborhood of RT #1 [740, 2258] RVT-GII HxlR Feature: gene Location: 740-1264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 773-1 1 30 bp Feature: gene Location: 1467-1787 bp Feature: gene Location: 1878-2258 bp Feature: domain Description: HxlR Location: 1905-2199 bp Feature: domain Description: HxlR Location: 1 905-21 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HxlR (pfam01638)

Seq: MAKH01000002.1 Lactobacillus crispatus strain C037 C037_Contig_2, whole genome shotgun sequence (70772 bp)
Overview 1 RT 1: 51033-56151 bp Neighborhood of RT #1 [51033, 56750] HTH_LacI PBP1_Qymf_like RVT-GII GIIM SunT HipB Feature: gene Location: 51033-52019 bp Feature: domain Description: HTH_LacI Location: 51054-51201 bp Feature: domain Description: HTH_LacI Location: 51054-512 01 bp Feature: domain Description: PBP1_Qymf_like Location: 51219-52014 bp Feature: domain Description: PBP1_Qymf_like Location: 512 19-52 014 bp Feature: gene Location: 52095-52382 bp Feature: gene Location: 52337-53392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52538-53156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 538-53156 bp Feature: domain Description: GIIM Note: maturase Location: 53213-53345 bp Feature: domain Description: GIIM Note: maturase Location: 532 13-53345 bp Feature: gene Location: 53999-55576 bp Feature: domain Description: SunT Location: 54047-55568 bp Feature: domain Description: SunT Location: 54047-55568 bp Feature: gene Location: 55905-56750 bp Feature: domain Description: HipB Location: 55935-56151 bp Feature: domain Description: HipB Location: 55935-56151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LacI (cd01392), PBP1_Qymf_like, RVT-GII, GIIM (pfam08388), SunT (COG2274), HipB (COG1396)

Seq: MAKH01000004.1 Lactobacillus crispatus strain C037 C037_Contig_4, whole genome shotgun sequence (22137 bp)
Overview 1 RT 1: 3-3440 bp Neighborhood of RT #1 [3, 3440] GTP_cyclohydro2 ribH RVT-GII group_II_RT_mat Feature: gene Location: 3-221 bp Feature: domain Description: GTP_cyclohydro2 Location: 6-210 bp Feature: domain Description: GTP_cyclohydro2 Location: 6-210 bp Feature: gene Location: 236-700 bp Feature: domain Description: ribH Location: 242-695 bp Feature: domain Description: ribH Location: 242-695 bp Feature: gene Location: 1616-1840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619-1718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619-1718 bp Feature: gene Location: 1966-2148 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1999-2122 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1999-2122 bp Feature: gene Location: 3114-3440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GTP_cyclohydro2 (pfam00925), ribH (PRK00061), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: MAKH01000007.1 Lactobacillus crispatus strain C037 C037_Contig_7, whole genome shotgun sequence (77559 bp)
Overview 1 RT 1: 81-2380 bp Neighborhood of RT #1 [81, 2394] RVT-AbiA RmlD_sub_bind dTDP_sugar_isom Feature: gene Location: 81-623 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 450-615 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 4 50-615 bp Feature: gene Location: 783-1769 bp Feature: domain Description: RmlD_sub_bind Location: 786-1731 bp Feature: domain Description: RmlD_sub_bind Location: 786-1731 bp Feature: gene Location: 1786-2394 bp Feature: domain Description: dTDP_sugar_isom Location: 1825-2380 bp Feature: domain Description: dTDP_sugar_isom Location: 1825-2380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, RmlD_sub_bind (pfam04321), dTDP_sugar_isom (pfam00908)