myRT

myRT report for GCA_001701695.1_ASM170169v1

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Seq: LYWS01000048.1 Klebsiella pneumoniae strain SKLX2845 WGC048082D-contig_9, whole genome shotgun sequence (363902 bp)
Overview 1 RT 1: 321844-331456 bp Neighborhood of RT #1 [321844, 331572] COG2958 AAA_15 AAA_15 RVT-Retrons COG0610 AAA_13 AAA_13 Feature: gene Location: 321844-322776 bp Ori: OCV68015.1 Feature: domain Description: COG2958 Location: 321862-322756 bp Feature: domain Description: COG2958 Location: 321 862-322756 bp Feature: gene Location: 323351-325468 bp Ori: OCV68016.1 Feature: domain Description: AAA_15 Location: 323354-323771 bp Feature: domain Description: AAA_1 5 Location: 323354-323771 bp Feature: domain Description: AAA_15 Location: 323909-324335 bp Feature: domain Description: AAA_1 5 Location: 323909-324335 bp Feature: gene Location: 325644-326741 bp Ori: OCV68068.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325782-326343 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325782-326343 bp Feature: gene Location: 327282-330401 bp Ori: OCV68017.1 Feature: domain Description: COG0610 Location: 327366-330378 bp Feature: domain Description: COG061 0 Location: 327366-330378 bp Feature: gene Location: 330394-331572 bp Ori: OCV68018.1 Feature: domain Description: AAA_13 Location: 330487-330661 bp Feature: domain Description: AAA_1 3 Location: 330487-330661 bp Feature: domain Description: AAA_13 Location: 330883-331456 bp Feature: domain Description: AAA_1 3 Location: 330883-331 456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2958 (Uncharacterized protein ), AAA_15 (pfam13175), RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_13 (pfam13166)

Seq: LYWS01000013.1 Klebsiella pneumoniae strain SKLX2845 WGC048082D-contig_20, whole genome shotgun sequence (62323 bp)
Overview 1 RT 1: 25515-30212 bp Neighborhood of RT #1 [25515, 30268] PRK10724 SmpB RVT-UG11 D COG3499 Feature: gene Location: 25515-25952 bp Ori: OCV74731.1 Feature: domain Description: PRK10724 Location: 25518-25947 bp Feature: domain Description: PRK1072 4 Location: 2 5518-2 5947 bp Feature: gene Location: 26102-26584 bp Ori: OCV74732.1 Feature: domain Description: SmpB Location: 26132-26576 bp Feature: domain Description: SmpB Location: 2 6132 -2 6576 bp Feature: gene Location: 27200-27973 bp Ori: OCV74733.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27335-27788 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 7335-2 7788 bp Feature: gene Location: 28686-29786 bp Ori: OCV74734.1 Feature: domain Description: D Location: 28698-29772 bp Feature: domain Description: D Location: 2 8698-2 9772 bp Feature: gene Location: 29783-30268 bp Ori: OCV74735.1 Feature: domain Description: COG3499 Location: 29786-30212 bp Feature: domain Description: COG3499 Location: 2 9786-302 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, D (PHA02561), COG3499 (Phage protein U )

Seq: LYWS01000017.1 Klebsiella pneumoniae strain SKLX2845 WGC048082D-contig_24, whole genome shotgun sequence (77436 bp)
Overview 1 RT 1: 4872-9912 bp Neighborhood of RT #1 [4872, 9914] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 4872-6143 bp Ori: OCV73998.1 Feature: domain Description: umuC Location: 4875-6138 bp Feature: domain Description: umuC Location: 4875-613 8 bp Feature: gene Location: 6143-6568 bp Ori: OCV73999.1 Feature: domain Description: PRK10276 Location: 6146-6554 bp Feature: domain Description: PRK10276 Location: 6146-6554 bp Feature: gene Location: 6973-8505 bp Ori: OCV74000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7375-8113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 75-8113 bp Feature: gene Location: 8739-8969 bp Feature: gene Location: 9489-9914 bp Ori: OCV74002.1 Feature: domain Description: Antirestrict Location: 9624-9912 bp Feature: domain Description: Antirestrict Location: 9624-9912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)