myRT

myRT report for GCA_001703855.1_ASM170385v1

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Seq: MBLQ01000109.1 Lactobacillus reuteri strain 480_44 contig_58, whole genome shotgun sequence (4624 bp)
Overview 1 RT 1: 876-4352 bp Neighborhood of RT #1 [876, 4516] RplU PRK10668 TetR_C_8 RVT-GII GIIM Feature: gene Location: 876-1184 bp Feature: domain Description: RplU Location: 879-1179 bp Feature: domain Description: RplU Location: 879-1 1 79 bp Feature: gene Location: 1395-2027 bp Feature: domain Description: PRK10668 Location: 1404-1605 bp Feature: domain Description: PRK1 0668 Location: 1 404-1 605 bp Feature: domain Description: TetR_C_8 Location: 1671-1953 bp Feature: domain Description: TetR_C_8 Location: 1 671 -1 953 bp Feature: gene Location: 3134-4516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-4070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452-4070 bp Feature: domain Description: GIIM Note: maturase Location: 4124-4352 bp Feature: domain Description: GIIM Note: maturase Location: 41 24-4352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10668 (DNA-binding transcriptional repressor AcrR; Provisional), TetR_C_8 (pfam14278), RVT-GII, GIIM (pfam08388), RplU (COG0261)

Seq: MBLQ01000110.1 Lactobacillus reuteri strain 480_44 contig_59, whole genome shotgun sequence (36860 bp)
Overview 1 RT 1: 6131-11986 bp Neighborhood of RT #1 [6131, 12753] HxlR AL_MDR group_II_RT_mat RVT-GII KxYKxGKxW Surf_Exclu_PgrA Surf_Exclu_PgrA Feature: gene Location: 6131-6475 bp Feature: domain Description: HxlR Location: 6164-6461 bp Feature: domain Description: HxlR Location: 6164-6461 bp Feature: gene Location: 6645-7667 bp Feature: domain Description: AL_MDR Location: 6648-7650 bp Feature: domain Description: AL_MDR Location: 6648-7650 bp Feature: gene Location: 8198-8836 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8309-8435 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 8309-8435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8630-8837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8630-8837 bp Feature: gene Location: 9379-10014 bp Feature: gene Location: 10201-12753 bp Feature: domain Description: KxYKxGKxW Location: 10237-10303 bp Feature: domain Description: KxYKxGKxW Location: 102 37-10303 bp Feature: domain Description: Surf_Exclu_PgrA Location: 10357-10576 bp Feature: domain Description: Surf_Exclu_PgrA Location: 10357-10576 bp Feature: domain Description: Surf_Exclu_PgrA Location: 11062-11986 bp Feature: domain Description: Surf_Exclu_PgrA Location: 11062 -11986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KxYKxGKxW (TIGR03715), Surf_Exclu_PgrA (TIGR04320), HxlR (pfam01638), AL_MDR (cd08252), group_II_RT_mat (TIGR04416), RVT-GII

Seq: MBLQ01000117.1 Lactobacillus reuteri strain 480_44 contig_65, whole genome shotgun sequence (8651 bp)
Overview 1 RT 1: 3436-8045 bp Neighborhood of RT #1 [3436, 8209] GanB KxYKxGKxW glucan_65_rpt glucan_65_rpt glucan_65_rpt glucan_65_rpt RVT-GII GIIM Feature: gene Location: 3436-4810 bp Feature: domain Description: GanB Location: 3772-4810 bp Feature: domain Description: GanB Location: 3 772-4810 bp Feature: gene Location: 5757-6668 bp Feature: domain Description: KxYKxGKxW Location: 5769-5835 bp Feature: domain Description: KxYKxGKxW Location: 5769-583 5 bp Feature: domain Description: glucan_65_rpt Location: 6168-6234 bp Feature: domain Description: glucan_65_rpt Location: 6168-623 4 bp Feature: domain Description: glucan_65_rpt Location: 6240-6354 bp Feature: domain Description: glucan_65_rpt Location: 6240-63 54 bp Feature: domain Description: glucan_65_rpt Location: 6375-6555 bp Feature: domain Description: glucan_65_rpt Location: 63 75-6555 bp Feature: domain Description: glucan_65_rpt Location: 6561-6654 bp Feature: domain Description: glucan_65_rpt Location: 6561-6654 bp Feature: gene Location: 6827-8209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7145-7763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7145-7763 bp Feature: domain Description: GIIM Note: maturase Location: 7817-8045 bp Feature: domain Description: GIIM Note: maturase Location: 7817-8045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanB (COG3867), KxYKxGKxW (TIGR03715), glucan_65_rpt (TIGR04035), RVT-GII, GIIM (pfam08388)