myRT

myRT report for GCA_001703885.1_ASM170388v1

Download annotations/find similar RTs

Seq: MBLS01000171.1 Lactobacillus reuteri strain 482_54 contig_85, whole genome shotgun sequence (12495 bp)
Overview 1 RT 1: 1957-10575 bp Neighborhood of RT #1 [1957, 10580] GanB KxYKxGKxW glucan_65_rpt glucan_65_rpt glucan_65_rpt glucan_65_rpt RVT-GII GIIM KxYKxGKxW glucan_65_rpt glucan_65_rpt glucan_65_rpt glucan_65_rpt glucan_65_rpt glucan_65_rpt Lreu_0056_like prfC Feature: gene Location: 1957-3331 bp Feature: domain Description: GanB Location: 2293-3331 bp Feature: domain Description: GanB Location: 2293-3331 bp Feature: gene Location: 4285-5195 bp Feature: domain Description: KxYKxGKxW Location: 4297-4363 bp Feature: domain Description: KxYKxGKxW Location: 4297-4363 bp Feature: domain Description: glucan_65_rpt Location: 4696-4762 bp Feature: domain Description: glucan_65_rpt Location: 4696-4762 bp Feature: domain Description: glucan_65_rpt Location: 4768-4882 bp Feature: domain Description: glucan_65_rpt Location: 4768-4882 bp Feature: domain Description: glucan_65_rpt Location: 4903-5083 bp Feature: domain Description: glucan_65_rpt Location: 4903-5083 bp Feature: domain Description: glucan_65_rpt Location: 5089-5176 bp Feature: domain Description: glucan_65_rpt Location: 5089-51 76 bp Feature: gene Location: 5354-6736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5672-6290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5672-6290 bp Feature: domain Description: GIIM Note: maturase Location: 6344-6572 bp Feature: domain Description: GIIM Note: maturase Location: 6344-6572 bp Feature: gene Location: 7243-8934 bp Feature: domain Description: KxYKxGKxW Location: 7249-7315 bp Feature: domain Description: KxYKxGKxW Location: 7249-731 5 bp Feature: domain Description: glucan_65_rpt Location: 7561-7690 bp Feature: domain Description: glucan_65_rpt Location: 7561 -7690 bp Feature: domain Description: glucan_65_rpt Location: 7705-7891 bp Feature: domain Description: glucan_65_rpt Location: 7705-7891 bp Feature: domain Description: glucan_65_rpt Location: 8014-8140 bp Feature: domain Description: glucan_65_rpt Location: 801 4-81 40 bp Feature: domain Description: glucan_65_rpt Location: 8140-8263 bp Feature: domain Description: glucan_65_rpt Location: 81 40-8263 bp Feature: domain Description: glucan_65_rpt Location: 8266-8392 bp Feature: domain Description: glucan_65_rpt Location: 8266-8392 bp Feature: domain Description: glucan_65_rpt Location: 8479-8557 bp Feature: domain Description: glucan_65_rpt Location: 8479-8557 bp Feature: domain Description: Lreu_0056_like Location: 8590-8920 bp Feature: domain Description: Lreu_0056_like Location: 8590-8920 bp Feature: gene Location: 9003-10580 bp Feature: domain Description: prfC Location: 9018-10575 bp Feature: domain Description: prfC Location: 901 8-1 0575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanB (COG3867), KxYKxGKxW (TIGR03715), glucan_65_rpt (TIGR04035), RVT-GII, GIIM (pfam08388), Lreu_0056_like (cd15778), prfC (TIGR00503)

Seq: MBLS01000142.1 Lactobacillus reuteri strain 482_54 contig_59, whole genome shotgun sequence (36836 bp)
Overview 1 RT 1: 24125-30733 bp Neighborhood of RT #1 [24125, 30747] KxYKxGKxW Surf_Exclu_PgrA Surf_Exclu_PgrA group_II_RT_mat RVT-GII AL_MDR HxlR Feature: gene Location: 24125-26677 bp Feature: domain Description: KxYKxGKxW Location: 24161-24227 bp Feature: domain Description: KxYKxGKxW Location: 2 4161-2 42 2 7 bp Feature: domain Description: Surf_Exclu_PgrA Location: 24281-24500 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2 42 81-2 4500 bp Feature: domain Description: Surf_Exclu_PgrA Location: 24986-25910 bp Feature: domain Description: Surf_Exclu_PgrA Location: 2 4986-2 5910 bp Feature: gene Location: 26864-27499 bp Feature: gene Location: 28042-28680 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 28153-28279 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 8153-2 82 79 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28474-28681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8474-2 8681 bp Feature: gene Location: 29211-30233 bp Feature: domain Description: AL_MDR Location: 29214-30216 bp Feature: domain Description: AL_MDR Location: 2 92 14-302 16 bp Feature: gene Location: 30403-30747 bp Feature: domain Description: HxlR Location: 30436-30733 bp Feature: domain Description: HxlR Location: 30436-30733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KxYKxGKxW (TIGR03715), Surf_Exclu_PgrA (TIGR04320), group_II_RT_mat (TIGR04416), RVT-GII, AL_MDR (cd08252), HxlR (pfam01638)

Seq: MBLS01000173.1 Lactobacillus reuteri strain 482_54 contig_87, whole genome shotgun sequence (1911 bp)
Overview 1 RT 1: 85-1303 bp Neighborhood of RT #1 [85, 1467] RVT-GII GIIM Feature: gene Location: 85-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403 -1021 bp Feature: domain Description: GIIM Note: maturase Location: 1075-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1075-13 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)