myRT

myRT report for GCA_001704765.1_ASM170476v1

Download annotations/find similar RTs

Seq: MBFK01000041.1 Ensifer shofinae strain CCBAU 251167 C2691, whole genome shotgun sequence (801 bp)
Overview 1 RT 1: 76-625 bp Neighborhood of RT #1 [76, 798] RVT-GII GIIM Feature: gene Location: 76-798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88-355 bp Feature: domain Description: GIIM Note: maturase Location: 403-625 bp Feature: domain Description: GIIM Note: maturase Location: 403-625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MBFK01000021.1 Ensifer shofinae strain CCBAU 251167 C2881, whole genome shotgun sequence (3907 bp)
Overview 1 RT 1: 3-3175 bp Neighborhood of RT #1 [3, 3175] DUF772 RVT-GII GIIM DDE_Tnp_1_6 Feature: gene Location: 3-155 bp Feature: domain Description: DUF772 Location: 69-147 bp Feature: domain Description: DUF772 Location: 69-147 bp Feature: gene Location: 430-660 bp Feature: gene Location: 684-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 888-1542 bp Feature: domain Description: GIIM Note: maturase Location: 1623-1857 bp Feature: domain Description: GIIM Note: maturase Location: 162 3-1857 bp Feature: gene Location: 2016-2999 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2730-2907 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2 730-2 907 bp Feature: gene Location: 3047-3175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751)

Seq: MBFK01000142.1 Ensifer shofinae strain CCBAU 251167 C3095, whole genome shotgun sequence (23758 bp)
Overview 1 RT 1: 1765-6513 bp Neighborhood of RT #1 [1765, 6638] COG4644 RVT-GII RVT-GII HTH_21 HTH_Tnp_1 Feature: gene Location: 1765-2094 bp Feature: domain Description: COG4644 Location: 1780-2089 bp Feature: domain Description: COG4644 Location: 1780-2089 bp Feature: gene Location: 2095-2940 bp Feature: gene Location: 2946-3716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2952-3561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2952-3 561 bp Feature: gene Location: 4004-4177 bp Feature: gene Location: 4509-5834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764-5454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4764-5454 bp Feature: gene Location: 6025-6330 bp Feature: domain Description: HTH_21 Location: 6076-6211 bp Feature: domain Description: HTH_21 Location: 6076-6211 bp Feature: gene Location: 6330-6638 bp Feature: domain Description: HTH_Tnp_1 Location: 6351-6513 bp Feature: domain Description: HTH_Tnp_1 Location: 63 51-6513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4644 (Transposase and inactivated derivatives, TnpA family ), RVT-GII, HTH_21 (pfam13276), HTH_Tnp_1 (pfam01527)

Seq: MBFK01000038.1 Ensifer shofinae strain CCBAU 251167 C3137, whole genome shotgun sequence (36188 bp)
Overview 1 RT 1: 19018-21913 bp Neighborhood of RT #1 [19018, 21913] TraH_2 RVT-GII RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 19018-19617 bp Feature: domain Description: TraH_2 Location: 19021-19612 bp Feature: domain Description: TraH_2 Location: 19021-19612 bp Feature: gene Location: 19793-19942 bp Feature: gene Location: 20113-20514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20410-20476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 204 10-204 76 bp Feature: gene Location: 20547-20705 bp Feature: gene Location: 20714-21178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20717-20801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20717-20801 bp Feature: domain Description: GIIM Note: maturase Location: 20870-21083 bp Feature: domain Description: GIIM Note: maturase Location: 20870-21083 bp Feature: gene Location: 21197-21553 bp Feature: domain Description: DDE_Tnp_1_4 Location: 21410-21548 bp Feature: domain Description: DDE_Tnp_1_4 Location: 214 10-2154 8 bp Feature: gene Location: 21578-21913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraH_2 (pfam06871), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)

Seq: MBFK01000024.1 Ensifer shofinae strain CCBAU 251167 scaffold60, whole genome shotgun sequence (100632 bp)
Overview 1 RT 1: 97697-100630 bp Neighborhood of RT #1 [97697, 100629] COG4702 YihS RVT-GII Feature: gene Location: 97697-98191 bp Feature: domain Description: COG4702 Location: 97700-98186 bp Feature: domain Description: COG4702 Location: 97700-98186 bp Feature: gene Location: 98202-99359 bp Feature: domain Description: YihS Location: 98211-99351 bp Feature: domain Description: YihS Location: 98211-9935 1 bp Feature: gene Location: 99844-100629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100213-100630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100213-100630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4702 (Uncharacterized protein, UPF0303 family ), YihS (COG2942), RVT-GII