myRT

myRT report for GCA_001705505.1_ASM170550v1

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Seq: MCNS01000047.1 Lactobacillus reuteri strain P43 Contig_053, whole genome shotgun sequence (1063 bp)
Overview 1 RT 1: 95-899 bp Neighborhood of RT #1 [95, 1063] RVT-GII GIIM Feature: gene Location: 95-1063 bp Ori: OCX46613.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98-61 7 bp Feature: domain Description: GIIM Note: maturase Location: 671-899 bp Feature: domain Description: GIIM Note: maturase Location: 671 -899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCNS01000067.1 Lactobacillus reuteri strain P43 P43-1M-filt50_Repeat_079, whole genome shotgun sequence (1053 bp)
Overview 1 RT 1: 151-751 bp Neighborhood of RT #1 [151, 915] RVT-GII GIIM Feature: gene Location: 151-915 bp Ori: OCX46606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154-469 bp Feature: domain Description: GIIM Note: maturase Location: 523-751 bp Feature: domain Description: GIIM Note: maturase Location: 52 3-751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MCNS01000003.1 Lactobacillus reuteri strain P43 Contig_003, whole genome shotgun sequence (182487 bp)
Overview 1 RT 1: 178582-182486 bp Neighborhood of RT #1 [178582, 182487] PRK00409 thioredoxin RVT-GII Feature: gene Location: 178582-180957 bp Ori: OCX49825.1 Feature: domain Description: PRK00409 Location: 178585-180955 bp Feature: domain Description: PRK00409 Location: 178585-180955 bp Feature: gene Location: 181048-181362 bp Ori: OCX49826.1 Feature: domain Description: thioredoxin Location: 181069-181354 bp Feature: domain Description: thioredoxin Location: 181069-1813 54 bp Feature: gene Location: 181850-182487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182168-182486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182168-182486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), thioredoxin (TIGR01068), RVT-GII

Seq: MCNS01000001.1 Lactobacillus reuteri strain P43 Contig_001, whole genome shotgun sequence (280812 bp)
Overview 1 RT 1: 276197-280648 bp Neighborhood of RT #1 [276197, 280812] obgE UvrC RVT-GII GIIM Feature: gene Location: 276197-277513 bp Ori: OCX50213.1 Gene: obgE Feature: domain Description: obgE Location: 276206-277508 bp Feature: domain Description: obgE Location: 276206-277508 bp Feature: gene Location: 277578-279389 bp Ori: OCX50214.1 Feature: domain Description: UvrC Location: 277590-279339 bp Feature: domain Description: UvrC Location: 277590-279339 bp Feature: gene Location: 279754-280812 bp Ori: OCX50223.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279760-280366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279760-280366 bp Feature: domain Description: GIIM Note: maturase Location: 280420-280648 bp Feature: domain Description: GIIM Note: maturase Location: 2804 20-28064 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT obgE (PRK12299), UvrC (COG0322), RVT-GII, GIIM (pfam08388)

Seq: MCNS01000025.1 Lactobacillus reuteri strain P43 Contig_025, whole genome shotgun sequence (35479 bp)
Overview 1 RT 1: 32488-35331 bp Neighborhood of RT #1 [32488, 35333] galactose_mutarotase_like RVT-GII GIIM group_II_RT_mat Feature: gene Location: 32488-32688 bp Feature: gene Location: 32806-33843 bp Ori: OCX46675.1 Feature: domain Description: galactose_mutarotase_like Location: 32860-33832 bp Feature: domain Description: galactose_mutarotase_like Location: 32860-33832 bp Feature: gene Location: 33950-34633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33953-34187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3395 3-34187 bp Feature: domain Description: GIIM Note: maturase Location: 34241-34469 bp Feature: domain Description: GIIM Note: maturase Location: 34241-34469 bp Feature: gene Location: 35043-35333 bp Ori: OCX46676.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 35193-35331 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 35 193-35 331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT galactose_mutarotase_like (cd09019), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: MCNS01000064.1 Lactobacillus reuteri strain P43 P43-1M-filt50_Repeat_074, whole genome shotgun sequence (1491 bp)
Overview 1 RT 1: 1-937 bp Neighborhood of RT #1 [1, 946] RVT-GII Feature: gene Location: 1-946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319-937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MCNS01000068.1 Lactobacillus reuteri strain P43 P43-1M-filt50_Repeat_080, whole genome shotgun sequence (493 bp)
Overview 1 RT 1: 1-493 bp Neighborhood of RT #1 [1, 493] RVT-GII Feature: gene Location: 1-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27 7 -493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MCNS01000004.1 Lactobacillus reuteri strain P43 Contig_004, whole genome shotgun sequence (299974 bp)
Overview 1 RT 1: 92715-99192 bp 2 RT 2: 204819-211666 bp Neighborhood of RT #1 [92715, 99200] ZntA TetR_C_8 RVT-GII DacC Neighborhood of RT #2 [204819, 211671] TIR_2 COG2865 RVT-GII guaA COG1373 Feature: gene Location: 92715-94571 bp Ori: OCX49206.1 Feature: domain Description: ZntA Location: 92760-94554 bp Feature: domain Description: ZntA Location: 92760-94554 bp Feature: gene Location: 94708-95133 bp Ori: OCX49352.1 Feature: domain Description: TetR_C_8 Location: 94798-95056 bp Feature: domain Description: TetR_C_8 Location: 94798 -95056 bp Feature: gene Location: 95535-96840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95853-96300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958 53-96300 bp Feature: gene Location: 97339-97779 bp Feature: gene Location: 97956-99200 bp Ori: OCX49208.1 Feature: domain Description: DacC Location: 97992-99192 bp Feature: domain Description: DacC Location: 97992-99192 bp Feature: gene Location: 204819-205697 bp Ori: OCX49273.1 Feature: domain Description: TIR_2 Location: 204846-205191 bp Feature: domain Description: TIR_2 Location: 2048 46-205191 bp Feature: gene Location: 205710-207236 bp Ori: OCX49274.1 Feature: domain Description: COG2865 Location: 205719-207192 bp Feature: domain Description: COG28 65 Location: 205719-207192 bp Feature: gene Location: 207502-207717 bp Ori: OCX49275.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207538-207661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 207538 -207661 bp Feature: gene Location: 208413-209966 bp Ori: OCX49276.1 Feature: domain Description: guaA Location: 208443-209964 bp Feature: domain Description: guaA Location: 208 443-209964 bp Feature: gene Location: 210481-211671 bp Ori: OCX49277.1 Feature: domain Description: COG1373 Location: 210487-211666 bp Feature: domain Description: COG1373 Location: 21048 7-211666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZntA (COG2217), TetR_C_8 (pfam14278), RVT-GII, DacC (COG1686), TIR_2 (pfam13676), COG2865 (Predicted transcriptional regulator, contains HTH domain ), guaA (PRK00074), COG1373 (Predicted ATPase, AAA+ superfamily )