myRT

myRT report for GCA_001707835.1_ASM170783v1

Download annotations/find similar RTs

Seq: LYDR01000058.1 Planctopirus hydrillae strain JC280 Contig16, whole genome shotgun sequence (51369 bp)
Overview 1 RT 1: 11247-20628 bp Neighborhood of RT #1 [11247, 20628] dinD ResIII SF2_C_EcoAI-like RVT-CRISPR-like RNase_HI_prokaryote_like Feature: gene Location: 11247-12089 bp Ori: ODA33122.1 Feature: domain Description: dinD Location: 11268-12069 bp Feature: domain Description: dinD Location: 1 1 268-1 2069 bp Feature: gene Location: 12086-15196 bp Ori: ODA33123.1 Feature: domain Description: ResIII Location: 12542-13205 bp Feature: domain Description: ResIII Location: 1 2542-1 3205 bp Feature: domain Description: SF2_C_EcoAI-like Location: 13817-14036 bp Feature: domain Description: SF2_C_EcoAI-like Location: 1 381 7-1 4036 bp Feature: gene Location: 15715-17529 bp Ori: ODA33124.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 16096-16648 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 6096-1 6648 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 17170-17458 bp Feature: domain Description: RNase_HI_prokaryote_like Location: 1 71 70-1 7458 bp Feature: gene Location: 17675-19081 bp Feature: gene Location: 19621-20628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dinD (PRK11525), ResIII (pfam04851), SF2_C_EcoAI-like (cd18799), RVT-CRISPR, RNase_HI_prokaryote_like (cd09278)

Seq: LYDR01000124.1 Planctopirus hydrillae strain JC280 Contig47, whole genome shotgun sequence (66215 bp)
Overview 1 RT 1: 32485-43267 bp Neighborhood of RT #1 [32485, 43267] met_A_Alw26 met_A_Alw26 met_A_Alw26 YydB RVT-UG5 COG3293 COG3293 Feature: gene Location: 32485-37146 bp Ori: ODA29726.1 Feature: domain Description: met_A_Alw26 Location: 34027-34213 bp Feature: domain Description: met_A_Alw2 6 Location: 3402 7-342 13 bp Feature: domain Description: met_A_Alw26 Location: 34987-35614 bp Feature: domain Description: met_A_Alw2 6 Location: 34987-35614 bp Feature: domain Description: met_A_Alw26 Location: 35944-36184 bp Feature: domain Description: met_A_Alw2 6 Location: 35944-36184 bp Feature: gene Location: 37112-39094 bp Ori: ODA29727.1 Feature: domain Description: YydB Location: 37211-37379 bp Feature: domain Description: YydB Location: 372 11-37379 bp Feature: gene Location: 39164-40711 bp Ori: ODA29728.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39749-40259 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39749-402 59 bp Feature: gene Location: 40764-41633 bp Ori: ODA29729.1 Feature: domain Description: COG3293 Location: 40791-41154 bp Feature: domain Description: COG32 93 Location: 40791-41154 bp Feature: domain Description: COG3293 Location: 41169-41562 bp Feature: domain Description: COG32 93 Location: 41169-41562 bp Feature: gene Location: 41834-43267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT met_A_Alw26 (TIGR02987), YydB (COG5293), RVT-UG5, COG3293 (Transposase )

Seq: LYDR01000158.1 Planctopirus hydrillae strain JC280 Contig89, whole genome shotgun sequence (339202 bp)
Overview 1 RT 1: 323455-328104 bp Neighborhood of RT #1 [323455, 328104] S2P-M50_SpoIVFB RVT-Retrons Feature: gene Location: 323455-323931 bp Feature: gene Location: 324011-324712 bp Ori: ODA28133.1 Feature: domain Description: S2P-M50_SpoIVFB Location: 324113-324692 bp Feature: domain Description: S2P-M50_SpoIVFB Location: 3 24113 -3 24692 bp Feature: gene Location: 324939-326390 bp Ori: ODA28134.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325533-326157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 2553 3 -3 26157 bp Feature: gene Location: 326449-327231 bp Feature: gene Location: 327469-328104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT S2P-M50_SpoIVFB (cd06161), RVT-Retrons