myRT

myRT report for GCA_001707885.1_ASM170788v1

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Seq: MASS01000115.1 Desulfosporosinus sp. BG contig00115, whole genome shotgun sequence (3685 bp)
Overview 1 RT 1: 195-2816 bp Neighborhood of RT #1 [195, 2902] RVT-GII RVT-GII GIIM Feature: gene Location: 195-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 468-1 1 1 3 bp Feature: gene Location: 1655-2902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1859-2516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 859-251 6 bp Feature: domain Description: GIIM Note: maturase Location: 2597-2816 bp Feature: domain Description: GIIM Note: maturase Location: 2597-281 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: MASS01000001.1 Desulfosporosinus sp. BG contig00001, whole genome shotgun sequence (201372 bp)
Overview 1 RT 1: 13622-21602 bp Neighborhood of RT #1 [13622, 21763] PolY_Pol_V_umuC RVT_N RVT-GII GIIM AAA_15 AAA_15 TOPRIM_OLD DUF87 YjgR Feature: gene Location: 13622-14050 bp Feature: gene Location: 14047-15570 bp Feature: domain Description: PolY_Pol_V_umuC Location: 14071-15319 bp Feature: domain Description: PolY_Pol_V_umuC Location: 14071-15319 bp Feature: gene Location: 15774-17552 bp Feature: RT Description: RVT_N Location: 15828-16074 bp Feature: RT Description: RVT_N Location: 1582 8-16074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16128-16788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1612 8-16788 bp Feature: domain Description: GIIM Note: maturase Location: 16851-17085 bp Feature: domain Description: GIIM Note: maturase Location: 16851-17085 bp Feature: gene Location: 18228-20117 bp Feature: domain Description: AAA_15 Location: 18231-18468 bp Feature: domain Description: AAA_15 Location: 182 31-18468 bp Feature: domain Description: AAA_15 Location: 19005-19248 bp Feature: domain Description: AAA_15 Location: 19005-192 48 bp Feature: domain Description: TOPRIM_OLD Location: 19392-19653 bp Feature: domain Description: TOPRIM_OLD Location: 19392 -19653 bp Feature: gene Location: 20117-21763 bp Feature: domain Description: DUF87 Location: 20561-21227 bp Feature: domain Description: DUF87 Location: 2 0561-2 12 2 7 bp Feature: domain Description: YjgR Location: 21278-21602 bp Feature: domain Description: YjgR Location: 2 12 78-2 1602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolY_Pol_V_umuC (cd01700), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), DUF87 (pfam01935), YjgR (COG0433)

Seq: MASS01000011.1 Desulfosporosinus sp. BG contig00011, whole genome shotgun sequence (100683 bp)
Overview 1 RT 1: 5650-14226 bp Neighborhood of RT #1 [5650, 14228] RVT-GII matK HNHc MPP_1 NB-ARC TPR RacX Feature: gene Location: 5650-5763 bp Feature: gene Location: 6683-6814 bp Feature: gene Location: 6885-8699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7152-7950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7152-7950 bp Feature: domain Description: matK Location: 8055-8286 bp Feature: domain Description: matK Location: 8055-8286 bp Feature: domain Description: HNHc Note: nucleases Location: 8484-8640 bp Feature: domain Description: HNHc Note: nucleases Location: 8484-8640 bp Feature: gene Location: 9678-12767 bp Feature: domain Description: MPP_1 Location: 9693-10428 bp Feature: domain Description: MPP_1 Location: 9693 -10428 bp Feature: domain Description: NB-ARC Location: 10794-11418 bp Feature: domain Description: NB-ARC Location: 10794-11418 bp Feature: domain Description: TPR Location: 12393-12465 bp Feature: domain Description: TPR Location: 123 93 -12465 bp Feature: gene Location: 13536-14228 bp Feature: domain Description: RacX Location: 13542-14226 bp Feature: domain Description: RacX Location: 13 542-14226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RacX (COG1794), RVT-GII, matK (CHL00002), HNHc (smart00507), MPP_1 (cd07400), NB-ARC (pfam00931), TPR (smart00028)