myRT

myRT report for GCA_001708145.1_ASM170814v1

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Seq: LYPE01000025.1 Escherichia coli strain Ec47VL scaffold_29, whole genome shotgun sequence (34527 bp)
Overview 1 RT 1: 26530-30882 bp Neighborhood of RT #1 [26530, 30887] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 26530-26748 bp Feature: gene Location: 27159-27365 bp Feature: gene Location: 28043-29944 bp Ori: ODA86534.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28310-29141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2831 0-291 41 bp Feature: domain Description: Intron_maturas2 Location: 29255-29513 bp Feature: domain Description: Intron_maturas2 Location: 29255-2951 3 bp Feature: domain Description: HNHc Note: nucleases Location: 29687-29849 bp Feature: domain Description: HNHc Note: nucleases Location: 29687-29849 bp Feature: gene Location: 30094-30591 bp Ori: ODA86535.1 Feature: domain Description: PRK13732 Location: 30097-30589 bp Feature: domain Description: PRK1 3732 Location: 30097-30589 bp Feature: gene Location: 30654-30887 bp Ori: ODA86536.1 Feature: domain Description: DUF905 Location: 30684-30882 bp Feature: domain Description: DUF905 Location: 30684-30882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LYPE01000059.1 Escherichia coli strain Ec47VL scaffold_6, whole genome shotgun sequence (238311 bp)
Overview 1 RT 1: 177620-181744 bp Neighborhood of RT #1 [177620, 182017] GDP_FS_SDR_e PRK15434 RVT-GII IS285 YhhI YhhI Feature: gene Location: 177620-178585 bp Ori: ODA85217.1 Feature: domain Description: GDP_FS_SDR_e Location: 177635-178559 bp Feature: domain Description: GDP_FS_SDR_e Location: 177635-178559 bp Feature: gene Location: 178588-179061 bp Ori: ODA85218.1 Feature: domain Description: PRK15434 Location: 178591-179041 bp Feature: domain Description: PRK15434 Location: 178591-179041 bp Feature: gene Location: 179763-180056 bp Ori: ODA85219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179934-180042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179934-180042 bp Feature: gene Location: 180105-180824 bp Feature: domain Description: IS285 Location: 180135-180825 bp Feature: domain Description: IS2 85 Location: 180135-18082 5 bp Feature: gene Location: 180967-182017 bp Feature: domain Description: YhhI Location: 180970-181330 bp Feature: domain Description: YhhI Location: 180970-181330 bp Feature: domain Description: YhhI Location: 181390-181744 bp Feature: domain Description: YhhI Location: 181390-181744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDP_FS_SDR_e (cd05239), PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII, IS285 (COG3328), YhhI (COG5433)

Seq: LYPE01000007.1 Escherichia coli strain Ec47VL scaffold_12, whole genome shotgun sequence (140561 bp)
Overview 1 RT 1: 51549-55431 bp Neighborhood of RT #1 [51549, 55436] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51549-52007 bp Ori: ODA88214.1 Feature: domain Description: dut Location: 51555-52002 bp Feature: domain Description: dut Location: 51555-52002 bp Feature: gene Location: 52114-52710 bp Ori: ODA88215.1 Feature: domain Description: slmA Location: 52120-52696 bp Feature: domain Description: slmA Location: 52120-52696 bp Feature: gene Location: 52756-53715 bp Ori: ODA88216.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52891-53440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52891-53 440 bp Feature: gene Location: 54013-54654 bp Ori: ODA88217.1 Feature: domain Description: pyrE Location: 54016-54649 bp Feature: domain Description: pyrE Location: 54016-54649 bp Feature: gene Location: 54720-55436 bp Ori: ODA88218.1 Feature: domain Description: rph Location: 54723-55431 bp Feature: domain Description: rph Location: 54723 -5543 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)