myRT

myRT report for GCA_001712795.1_ASM171279v1

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Seq: KV757658.1 Nostoc sp. KVJ20 genomic scaffold contig_122, whole genome shotgun sequence (267006 bp)
Overview 1 RT 1: 172014-179040 bp 2 RT 2: 205108-210709 bp Neighborhood of RT #1 [172014, 179040] HTH_XRE UvrD DEDDh UvrD RVT-UG25 Neighborhood of RT #2 [205108, 210709] RVT_N RVT-GII RVT_N RVT-GII GIIM McrA McrA Feature: gene Location: 172014-172262 bp Ori: ODH02424.1 Feature: domain Description: HTH_XRE Location: 172059-172209 bp Feature: domain Description: HTH_XRE Location: 1 72059-1 72209 bp Feature: gene Location: 172303-174762 bp Ori: ODH02425.1 Feature: domain Description: UvrD Location: 172318-173590 bp Feature: domain Description: UvrD Location: 1 7231 8-1 73590 bp Feature: domain Description: DEDDh Location: 173698-174160 bp Feature: domain Description: DEDDh Location: 1 73698-1 741 60 bp Feature: domain Description: UvrD Location: 174229-174745 bp Feature: domain Description: UvrD Location: 1 74229-1 74745 bp Feature: gene Location: 174759-177821 bp Ori: ODH02426.1 Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 176256-176655 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 1 76256-1 76655 bp Feature: gene Location: 178098-178394 bp Feature: gene Location: 178585-179040 bp Feature: gene Location: 205108-205323 bp Feature: gene Location: 205437-205676 bp Feature: gene Location: 206263-207411 bp Feature: domain Description: RVT_N Location: 206299-206539 bp Feature: domain Description: RVT_N Location: 206299-206539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206596-207259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206596-207259 bp Feature: gene Location: 208135-209832 bp Ori: ODH02516.1 Feature: domain Description: RVT_N Location: 208147-208393 bp Feature: domain Description: RVT_N Location: 2081 47-208393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208435-209131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208435-2091 31 bp Feature: domain Description: GIIM Note: maturase Location: 209215-209443 bp Feature: domain Description: GIIM Note: maturase Location: 20921 5-209443 bp Feature: domain Description: McrA Location: 209512-209803 bp Feature: domain Description: McrA Location: 20951 2-209803 bp Feature: gene Location: 209829-210359 bp Ori: ODH02450.1 Feature: domain Description: McrA Location: 210006-210339 bp Feature: domain Description: McrA Location: 21 0006-21 0339 bp Feature: gene Location: 210518-210709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), UvrD (COG0210), DEDDh (cd06127), RVT-UG25, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: KV757742.1 Nostoc sp. KVJ20 genomic scaffold contig_206, whole genome shotgun sequence (18915 bp)
Overview 1 RT 1: 11736-16086 bp Neighborhood of RT #1 [11736, 16094] YafQ RVT-UG12 2A51 PTP-bact Feature: gene Location: 11736-11951 bp Feature: gene Location: 11948-12232 bp Ori: ODH00288.1 Feature: domain Description: YafQ Location: 11951-12230 bp Feature: domain Description: YafQ Location: 11951-12 2 30 bp Feature: gene Location: 12555-14108 bp Ori: ODH00289.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12918-13356 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 12 918-13356 bp Feature: gene Location: 14316-15530 bp Ori: ODH00290.1 Feature: domain Description: 2A51 Location: 14424-15504 bp Feature: domain Description: 2 A51 Location: 1442 4-15504 bp Feature: gene Location: 15672-16094 bp Ori: ODH00291.1 Feature: domain Description: PTP-bact Location: 15681-16086 bp Feature: domain Description: PTP-bact Location: 15681-16086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafQ (COG3041), RVT-UG12, 2A51 (TIGR00937), PTP-bact (cd14503)

Seq: KV757585.1 Nostoc sp. KVJ20 genomic scaffold contig_49, whole genome shotgun sequence (185012 bp)
Overview 1 RT 1: 103814-117378 bp Neighborhood of RT #1 [103814, 117398] COG3464 COG3464 RVT_N RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM HNHc PRK12275 RVT_N RVT-GII GIIM McrA DnaB Feature: gene Location: 103814-104278 bp Feature: gene Location: 104609-106273 bp Ori: ODG98477.1 Feature: domain Description: COG3464 Location: 104633-105332 bp Feature: domain Description: COG3 464 Location: 10463 3 -1053 3 2 bp Feature: domain Description: COG3464 Location: 105491-106268 bp Feature: domain Description: COG3 464 Location: 105491-106268 bp Feature: gene Location: 107138-107863 bp Feature: domain Description: RVT_N Location: 107186-107432 bp Feature: domain Description: RVT_N Location: 107186-10743 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107480-107864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107480-107864 bp Feature: gene Location: 108021-108248 bp Feature: gene Location: 108282-108893 bp Feature: gene Location: 108951-110321 bp Feature: domain Description: Resolvase Location: 108975-109413 bp Feature: domain Description: Resolvase Location: 108975-109413 bp Feature: domain Description: Recombinase Location: 109506-109866 bp Feature: domain Description: Recombinase Location: 109506-109866 bp Feature: domain Description: Zn_ribbon_recom Location: 109908-110112 bp Feature: domain Description: Zn_ribbon_recom Location: 109908-110112 bp Feature: gene Location: 110587-111549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110590-110860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110590-110860 bp Feature: domain Description: GIIM Note: maturase Location: 110938-111166 bp Feature: domain Description: GIIM Note: maturase Location: 11093 8-111166 bp Feature: domain Description: HNHc Note: nucleases Location: 111370-111529 bp Feature: domain Description: HNHc Note: nucleases Location: 1113 70-111529 bp Feature: gene Location: 111673-112023 bp Ori: ODG98480.1 Feature: domain Description: PRK12275 Location: 111676-112018 bp Feature: domain Description: PRK12275 Location: 111676-112018 bp Feature: gene Location: 112835-114607 bp Ori: ODG98539.1 Feature: domain Description: RVT_N Location: 112877-113123 bp Feature: domain Description: RVT_N Location: 112877-113 123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113165-113858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 165-113 858 bp Feature: domain Description: GIIM Note: maturase Location: 113960-114191 bp Feature: domain Description: GIIM Note: maturase Location: 113 960-114191 bp Feature: domain Description: McrA Location: 114230-114548 bp Feature: domain Description: McrA Location: 11423 0-114548 bp Feature: gene Location: 115277-116080 bp Feature: gene Location: 116055-117398 bp Ori: ODG98482.1 Feature: domain Description: DnaB Location: 116070-117378 bp Feature: domain Description: DnaB Location: 116070-1173 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), HNHc (smart00507), PRK12275 (hypothetical protein; Reviewed), McrA (COG4058)
DnaB (TIGR00665)

Seq: KV757645.1 Nostoc sp. KVJ20 genomic scaffold contig_109, whole genome shotgun sequence (48852 bp)
Overview 1 RT 1: 17479-21961 bp Neighborhood of RT #1 [17479, 22770] RVT_N RVT-GII McrA CitB AAA_10 Feature: gene Location: 17479-17727 bp Feature: gene Location: 18274-18459 bp Feature: gene Location: 18452-19993 bp Ori: ODH02917.1 Feature: domain Description: RVT_N Location: 18488-18722 bp Feature: domain Description: RVT_N Location: 184 88-18722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18779-19406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18779-194 06 bp Feature: domain Description: McrA Location: 19640-19961 bp Feature: domain Description: McrA Location: 1964 0-19961 bp Feature: gene Location: 20087-20710 bp Ori: ODH02918.1 Feature: domain Description: CitB Location: 20093-20612 bp Feature: domain Description: CitB Location: 20093-20612 bp Feature: gene Location: 20971-22770 bp Ori: ODH02919.1 Feature: domain Description: AAA_10 Location: 21835-21961 bp Feature: domain Description: AAA_10 Location: 21835-21961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), CitB (TIGR02484), AAA_10 (pfam12846)

Seq: KV757689.1 Nostoc sp. KVJ20 genomic scaffold contig_153, whole genome shotgun sequence (19410 bp)
Overview 1 RT 1: 184-8177 bp Neighborhood of RT #1 [184, 8299] RVT-UG7 PRK09866 Feature: gene Location: 184-1767 bp Feature: gene Location: 1853-3301 bp Feature: gene Location: 3565-5202 bp Ori: ODH01487.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3937-4360 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3937-4360 bp Feature: gene Location: 5350-5754 bp Feature: gene Location: 5912-8299 bp Ori: ODH01489.1 Feature: domain Description: PRK09866 Location: 5966-8177 bp Feature: domain Description: PRK09866 Location: 5 966-8177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09866 (clamp-binding protein CrfC)

Seq: KV757810.1 Nostoc sp. KVJ20 genomic scaffold contig_274, whole genome shotgun sequence (2631 bp)
Overview 1 RT 1: 836-2483 bp Neighborhood of RT #1 [836, 2536] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 836-2536 bp Ori: ODG99441.1 Feature: domain Description: RVT_N Location: 881-1121 bp Feature: domain Description: RVT_N Location: 881-1121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1175-1814 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2120 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2120 bp Feature: domain Description: HNHc Note: nucleases Location: 2324-2483 bp Feature: domain Description: HNHc Note: nucleases Location: 2324-2483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: KV757760.1 Nostoc sp. KVJ20 genomic scaffold contig_224, whole genome shotgun sequence (30730 bp)
Overview 1 RT 1: 9189-15665 bp Neighborhood of RT #1 [9189, 15682] DUF1392 DNA_methylase RVT_N RVT-GII GIIM McrA FhaB FhaB Feature: gene Location: 9189-9425 bp Feature: domain Description: DUF1392 Location: 9192-9426 bp Feature: domain Description: DUF1392 Location: 9192-9426 bp Feature: gene Location: 9422-9817 bp Ori: ODG99949.1 Feature: domain Description: DNA_methylase Location: 9602-9779 bp Feature: domain Description: DNA_methylase Location: 9602-97 7 9 bp Feature: gene Location: 10040-11937 bp Feature: domain Description: RVT_N Location: 10076-10322 bp Feature: domain Description: RVT_N Location: 1007 6-10322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10364-11060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10364-11060 bp Feature: domain Description: GIIM Note: maturase Location: 11159-11393 bp Feature: domain Description: GIIM Note: maturase Location: 11159-11393 bp Feature: domain Description: McrA Location: 11483-11804 bp Feature: domain Description: McrA Location: 11483-11804 bp Feature: gene Location: 12620-13021 bp Feature: gene Location: 13364-15682 bp Ori: ODG99950.1 Feature: domain Description: FhaB Location: 13394-14111 bp Feature: domain Description: FhaB Location: 13394-14111 bp Feature: domain Description: FhaB Location: 14180-15665 bp Feature: domain Description: FhaB Location: 14180-15665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1392 (pfam07154), DNA_methylase (pfam00145), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), FhaB (COG3210)

Seq: KV757730.1 Nostoc sp. KVJ20 genomic scaffold contig_194, whole genome shotgun sequence (48779 bp)
Overview 1 RT 1: 33804-40355 bp Neighborhood of RT #1 [33804, 40366] PRK07396 DUF2887 DUF4351 RVT-UG12 PRK07449 FolB Feature: gene Location: 33804-34637 bp Ori: ODH00531.1 Feature: domain Description: PRK07396 Location: 33810-34635 bp Feature: domain Description: PRK07396 Location: 338 10-34635 bp Feature: gene Location: 34778-35662 bp Ori: ODH00532.1 Feature: domain Description: DUF2887 Location: 34787-35375 bp Feature: domain Description: DUF28 8 7 Location: 3478 7-35375 bp Feature: domain Description: DUF4351 Location: 35468-35642 bp Feature: domain Description: DUF4351 Location: 35468 -35642 bp Feature: gene Location: 36163-37851 bp Ori: ODH00533.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 36589-37033 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3658 9-37033 bp Feature: gene Location: 38073-39830 bp Ori: ODH00534.1 Feature: domain Description: PRK07449 Location: 38097-39810 bp Feature: domain Description: PRK07449 Location: 38 097-398 10 bp Feature: gene Location: 39998-40366 bp Ori: ODH00535.1 Feature: domain Description: FolB Location: 40001-40355 bp Feature: domain Description: FolB Location: 40001-40355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07396 (dihydroxynaphthoic acid synthetase; Validated), DUF2887 (pfam11103), DUF4351 (pfam14261), RVT-UG12, PRK07449 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated), FolB (smart00905)