myRT

myRT report for GCA_001713545.1_ASM171354v1

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Seq: LXFJ01000005.1 Escherichia coli strain NA703 contig005, whole genome shotgun sequence (238646 bp)
Overview 1 RT 1: 199349-205740 bp Neighborhood of RT #1 [199349, 205766] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 199349-200404 bp Ori: ODH31873.1 Feature: domain Description: YesN Location: 199352-199742 bp Feature: domain Description: YesN Location: 1 99352-1 99742 bp Feature: domain Description: YesN Location: 200084-200381 bp Feature: domain Description: YesN Location: 200084-200381 bp Feature: gene Location: 200421-201650 bp Ori: ODH31874.1 Feature: domain Description: YesM Location: 200901-201642 bp Feature: domain Description: YesM Location: 200901 -201 642 bp Feature: gene Location: 202233-202754 bp Ori: ODH31875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202239-202521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202239-202521 bp Feature: domain Description: GIIM Note: maturase Location: 202569-202749 bp Feature: domain Description: GIIM Note: maturase Location: 202569-202749 bp Feature: gene Location: 202782-203321 bp Ori: ODH31876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203112-203190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031 1 2-2031 90 bp Feature: gene Location: 203807-204712 bp Feature: gene Location: 204849-205766 bp Ori: ODH31878.1 Feature: domain Description: PFLE_PFLC Location: 204885-205740 bp Feature: domain Description: PFLE_PFLC Location: 204885-205740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LXFJ01000051.1 Escherichia coli strain NA703 contig051, whole genome shotgun sequence (22403 bp)
Overview 1 RT 1: 17747-22403 bp Neighborhood of RT #1 [17747, 22403] psiB RVT-GII Intron_maturas2 HNHc Feature: gene Location: 17747-18181 bp Ori: ODH26989.1 Gene: psiB Feature: domain Description: psiB Location: 17750-18176 bp Feature: domain Description: psiB Location: 17750-18176 bp Feature: gene Location: 18234-19523 bp Feature: gene Location: 19706-21607 bp Ori: ODH26983.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19973-20804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19973-2 0804 bp Feature: domain Description: Intron_maturas2 Location: 20918-21176 bp Feature: domain Description: Intron_maturas2 Location: 2 0918-2 1176 bp Feature: domain Description: HNHc Note: nucleases Location: 21350-21512 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1350-2 1512 bp Feature: gene Location: 22285-22403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT psiB (PRK13701), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: LXFJ01000007.1 Escherichia coli strain NA703 contig007, whole genome shotgun sequence (153545 bp)
Overview 1 RT 1: 146257-153427 bp Neighborhood of RT #1 [146257, 153427] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM Feature: gene Location: 146257-146529 bp Ori: ODH31374.1 Feature: domain Description: PRK09678 Location: 146266-146422 bp Feature: domain Description: PRK09678 Location: 146266-146422 bp Feature: gene Location: 147175-148143 bp Feature: gene Location: 148145-149077 bp Ori: ODH31376.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 148247-148841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 148247-148841 bp Feature: gene Location: 149532-150673 bp Feature: domain Description: Arm-DNA-bind_3 Location: 149541-149793 bp Feature: domain Description: Arm-DNA-bind_3 Location: 149541-149793 bp Feature: gene Location: 150676-151062 bp Ori: ODH31377.1 Feature: domain Description: PHA02517 Location: 150679-151060 bp Feature: domain Description: PHA02517 Location: 150679-151060 bp Feature: gene Location: 151239-152747 bp Ori: ODH31378.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151497-152229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151497-152229 bp Feature: domain Description: GIIM Note: maturase Location: 152304-152502 bp Feature: domain Description: GIIM Note: maturase Location: 1523 04-152502 bp Feature: gene Location: 152716-153141 bp Feature: gene Location: 153056-153427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)