myRT

myRT report for GCA_001714645.1_ASM171464v1

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Seq: MABI01000104.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033855 CFSAN033855_44, whole genome shotgun sequence (41786 bp)
Overview 1 RT 1: 15152-20996 bp Neighborhood of RT #1 [15152, 21001] INT_P4_C RVT-Retrons PRK10473 PRK10216 Feature: gene Location: 15152-15862 bp Ori: ODJ05794.1 Feature: domain Description: INT_P4_C Location: 15260-15791 bp Feature: domain Description: INT_P4_C Location: 1 5260-1 5791 bp Feature: gene Location: 16187-17149 bp Feature: gene Location: 17149-18084 bp Ori: ODJ05772.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17260-17845 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7260-1 7845 bp Feature: gene Location: 18886-20073 bp Ori: ODJ05773.1 Feature: domain Description: PRK10473 Location: 18889-20065 bp Feature: domain Description: PRK1 0473 Location: 1 8889-20065 bp Feature: gene Location: 20042-21001 bp Ori: ODJ05774.1 Feature: domain Description: PRK10216 Location: 20045-20996 bp Feature: domain Description: PRK1 021 6 Location: 20045-20996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter), PRK10216 (HTH-type transcriptional regulator YidZ)

Seq: MABI01000027.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033855 CFSAN033855_122, whole genome shotgun sequence (2255 bp)
Overview 1 RT 1: 53-2176 bp Neighborhood of RT #1 [53, 2255] InsE PHA02517 RVT-GII Feature: gene Location: 53-376 bp Ori: ODJ08229.1 Feature: domain Description: InsE Location: 65-374 bp Feature: domain Description: InsE Location: 65-374 bp Feature: gene Location: 376-855 bp Ori: ODJ08230.1 Feature: domain Description: PHA02517 Location: 436-790 bp Feature: domain Description: PHA02 517 Location: 436-790 bp Feature: gene Location: 1462-2255 bp Ori: ODJ08231.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1720-2176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 0-2 176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: MABI01000053.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033855 CFSAN033855_146, whole genome shotgun sequence (977 bp)
Overview 1 RT 1: 186-753 bp Neighborhood of RT #1 [186, 977] RVT-GII GIIM Feature: gene Location: 186-977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249-459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249-459 bp Feature: domain Description: GIIM Note: maturase Location: 534-753 bp Feature: domain Description: GIIM Note: maturase Location: 53 4-753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)