myRT

myRT report for GCA_001714965.1_ASM171496v1

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Seq: MDJK01000120.1 Shigella sp. FC2383 NODE_208_length_6594_cov_100.51_ID_415, whole genome shotgun sequence (6594 bp)
Overview 1 RT 1: 3844-6418 bp Neighborhood of RT #1 [3844, 6444] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3844-4329 bp Feature: domain Description: COG3547 Location: 3862-4315 bp Feature: domain Description: COG3547 Location: 3862-431 5 bp Feature: gene Location: 4356-4499 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4365-4476 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4365-4476 bp Feature: gene Location: 4618-5835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4804-5458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4804-5458 bp Feature: domain Description: GIIM Note: maturase Location: 5536-5758 bp Feature: domain Description: GIIM Note: maturase Location: 5536-5758 bp Feature: gene Location: 6313-6444 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6325-6418 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6325-641 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: MDJK01000249.1 Shigella sp. FC2383 NODE_324_length_2427_cov_104.65_ID_647, whole genome shotgun sequence (2427 bp)
Overview 1 RT 1: 1-2329 bp Neighborhood of RT #1 [1, 2328] PAP2_acid_phosphatase RVT-GII Feature: gene Location: 1-106 bp Feature: gene Location: 278-1027 bp Feature: domain Description: PAP2_acid_phosphatase Location: 353-1007 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 353-1007 bp Feature: gene Location: 1636-2328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936-2329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936-2 32 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PAP2_acid_phosphatase (cd03397)