myRT

myRT report for GCA_001718185.1_ASM171818v1

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Seq: LXEM01000031.1 Bradyrhizobium elkanii strain BLY6-1 BLY6-1_trimmed_paired_contig_37, whole genome shotgun sequence (74255 bp)
Overview 1 RT 1: 11670-19823 bp Neighborhood of RT #1 [11670, 19855] RVT-GII PRK14104 groES Feature: gene Location: 11670-12059 bp Feature: gene Location: 13626-14381 bp Feature: gene Location: 15273-16598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15528-16215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5528-1 621 5 bp Feature: gene Location: 17803-19452 bp Feature: domain Description: PRK14104 Location: 17806-19435 bp Feature: domain Description: PRK1 41 04 Location: 1 7806-1 9435 bp Feature: gene Location: 19541-19855 bp Feature: domain Description: groES Location: 19544-19823 bp Feature: domain Description: groES Location: 1 9544-1 9823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK14104 (chaperonin GroEL; Provisional), groES (PRK14533)

Seq: LXEM01000017.1 Bradyrhizobium elkanii strain BLY6-1 BLY6-1_trimmed_paired_contig_24, whole genome shotgun sequence (240964 bp)
Overview 1 RT 1: 56514-61273 bp Neighborhood of RT #1 [56514, 61284] DUF5131 RVT-DGRs PHA00652 PHA00653 Feature: gene Location: 56514-57260 bp Feature: gene Location: 57250-58416 bp Feature: domain Description: DUF5131 Location: 57265-58390 bp Feature: domain Description: DUF5131 Location: 572 65-58390 bp Feature: gene Location: 58592-59599 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58805-59468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58805-59468 bp Feature: gene Location: 59914-60315 bp Feature: domain Description: PHA00652 Location: 59947-60271 bp Feature: domain Description: PHA00652 Location: 59947-602 71 bp Feature: gene Location: 60346-61284 bp Feature: domain Description: PHA00653 Location: 60397-61273 bp Feature: domain Description: PHA00653 Location: 60397-612 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-DGRs, PHA00652 (hypothetical protein), PHA00653 (mtd;major tropism determinant)

Seq: LXEM01000038.1 Bradyrhizobium elkanii strain BLY6-1 BLY6-1_trimmed_paired_contig_43, whole genome shotgun sequence (19255 bp)
Overview 1 RT 1: 3479-7701 bp Neighborhood of RT #1 [3479, 7742] PinE RVT-GII PotB PotC Feature: gene Location: 3479-4156 bp Feature: domain Description: PinE Location: 3524-4106 bp Feature: domain Description: PinE Location: 3 524-4106 bp Feature: gene Location: 4789-5079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4807-4921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4807-4921 bp Feature: gene Location: 6067-6924 bp Feature: domain Description: PotB Location: 6091-6886 bp Feature: domain Description: PotB Location: 6091-6886 bp Feature: gene Location: 6921-7742 bp Feature: domain Description: PotC Location: 6960-7701 bp Feature: domain Description: PotC Location: 6960-7701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PotB (COG1176), PotC (COG1177)

Seq: LXEM01000030.1 Bradyrhizobium elkanii strain BLY6-1 BLY6-1_trimmed_paired_contig_36, whole genome shotgun sequence (8392 bp)
Overview 1 RT 1: 3946-8147 bp Neighborhood of RT #1 [3946, 8236] LhgO DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 3946-5049 bp Feature: domain Description: LhgO Location: 3949-5041 bp Feature: domain Description: LhgO Location: 394 9-504 1 bp Feature: gene Location: 5391-6422 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5397-6246 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5397-624 6 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6273-6378 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6273-6378 bp Feature: gene Location: 6932-8236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7217-7859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7217-7859 bp Feature: domain Description: GIIM Note: maturase Location: 7934-8147 bp Feature: domain Description: GIIM Note: maturase Location: 7934 -814 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LhgO (COG0579), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: LXEM01000032.1 Bradyrhizobium elkanii strain BLY6-1 BLY6-1_trimmed_paired_contig_38, whole genome shotgun sequence (296712 bp)
Overview 1 RT 1: 25598-32456 bp Neighborhood of RT #1 [25598, 32527] ACAD_FadE2 DDE_5 RVT-GII TauD Feature: gene Location: 25598-26833 bp Feature: domain Description: ACAD_FadE2 Location: 25625-26807 bp Feature: domain Description: ACAD_FadE2 Location: 25 625 -26807 bp Feature: gene Location: 28132-29517 bp Feature: domain Description: DDE_5 Location: 28210-29002 bp Feature: domain Description: DDE_5 Location: 28210-29002 bp Feature: gene Location: 29581-31056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29989-30679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29989-30679 bp Feature: gene Location: 31637-32527 bp Feature: domain Description: TauD Location: 31679-32456 bp Feature: domain Description: TauD Location: 31679-3245 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACAD_FadE2 (cd01155), DDE_5 (pfam13546), RVT-GII, TauD (pfam02668)