myRT

myRT report for GCA_001718205.1_ASM171820v1

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Seq: LWUI01000057.1 Bradyrhizobium elkanii strain BLY3-8 BLY3-8_trimmed_paired_contig_60, whole genome shotgun sequence (74255 bp)
Overview 1 RT 1: 11670-19823 bp Neighborhood of RT #1 [11670, 19855] RVT-GII PRK14104 groES Feature: gene Location: 11670-12059 bp Feature: gene Location: 13626-14381 bp Feature: gene Location: 15273-16598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15528-16215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5528-1 621 5 bp Feature: gene Location: 17803-19452 bp Feature: domain Description: PRK14104 Location: 17806-19435 bp Feature: domain Description: PRK1 41 04 Location: 1 7806-1 9435 bp Feature: gene Location: 19541-19855 bp Feature: domain Description: groES Location: 19544-19823 bp Feature: domain Description: groES Location: 1 9544-1 9823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK14104 (chaperonin GroEL; Provisional), groES (PRK14533)

Seq: LWUI01000062.1 Bradyrhizobium elkanii strain BLY3-8 BLY3-8_trimmed_paired_contig_65, whole genome shotgun sequence (19255 bp)
Overview 1 RT 1: 3479-7701 bp Neighborhood of RT #1 [3479, 7742] PinE RVT-GII PotB PotC Feature: gene Location: 3479-4156 bp Feature: domain Description: PinE Location: 3524-4106 bp Feature: domain Description: PinE Location: 352 4-4106 bp Feature: gene Location: 4789-5079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4807-4921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4807-492 1 bp Feature: gene Location: 6067-6924 bp Feature: domain Description: PotB Location: 6091-6886 bp Feature: domain Description: PotB Location: 6091-6886 bp Feature: gene Location: 6921-7742 bp Feature: domain Description: PotC Location: 6960-7701 bp Feature: domain Description: PotC Location: 6960-7701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PotB (COG1176), PotC (COG1177)

Seq: LWUI01000009.1 Bradyrhizobium elkanii strain BLY3-8 BLY3-8_trimmed_paired_contig_17, whole genome shotgun sequence (296253 bp)
Overview 1 RT 1: 264630-271533 bp Neighborhood of RT #1 [264630, 271559] TauD RVT-GII DDE_5 ACAD_FadE2 Feature: gene Location: 264630-265520 bp Feature: domain Description: TauD Location: 264672-265449 bp Feature: domain Description: TauD Location: 264672-265449 bp Feature: gene Location: 266101-267576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266509-267199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266509-267199 bp Feature: gene Location: 267640-269025 bp Feature: domain Description: DDE_5 Location: 267718-268510 bp Feature: domain Description: DDE_5 Location: 267718-268510 bp Feature: gene Location: 270324-271559 bp Feature: domain Description: ACAD_FadE2 Location: 270351-271533 bp Feature: domain Description: ACAD_FadE2 Location: 2703 51-27153 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauD (pfam02668), RVT-GII, DDE_5 (pfam13546), ACAD_FadE2 (cd01155)

Seq: LWUI01000088.1 Bradyrhizobium elkanii strain BLY3-8 BLY3-8_trimmed_paired_contig_89, whole genome shotgun sequence (8392 bp)
Overview 1 RT 1: 157-4439 bp Neighborhood of RT #1 [157, 4447] RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C LhgO Feature: gene Location: 157-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 2-1084 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1372 bp Feature: domain Description: GIIM Note: maturase Location: 1159-1372 bp Feature: gene Location: 1971-3002 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1977-2826 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1977-2826 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2853-2958 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2853-2958 bp Feature: gene Location: 3344-4447 bp Feature: domain Description: LhgO Location: 3347-4439 bp Feature: domain Description: LhgO Location: 334 7-4 4 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LhgO (COG0579)

Seq: LWUI01000056.1 Bradyrhizobium elkanii strain BLY3-8 BLY3-8_trimmed_paired_contig_6, whole genome shotgun sequence (128705 bp)
Overview 1 RT 1: 56514-61273 bp Neighborhood of RT #1 [56514, 61284] DUF5131 RVT-DGRs PHA00652 PHA00653 Feature: gene Location: 56514-57260 bp Feature: gene Location: 57250-58416 bp Feature: domain Description: DUF5131 Location: 57265-58390 bp Feature: domain Description: DUF5 131 Location: 5 7265 -5 8390 bp Feature: gene Location: 58592-59599 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58805-59468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 8805 -5 9468 bp Feature: gene Location: 59914-60315 bp Feature: domain Description: PHA00652 Location: 59947-60271 bp Feature: domain Description: PHA0065 2 Location: 5 9947-60271 bp Feature: gene Location: 60346-61284 bp Feature: domain Description: PHA00653 Location: 60397-61273 bp Feature: domain Description: PHA0065 3 Location: 60397-61273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5131 (pfam07505), RVT-DGRs, PHA00652 (hypothetical protein), PHA00653 (mtd;major tropism determinant)