myRT

myRT report for GCA_001720705.1_ASM172070v1

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Seq: MAGE01000032.1 Klebsiella pneumoniae strain CFSAN044569 CFSAN044569_2, whole genome shotgun sequence (665178 bp)
Overview 1 RT 1: 585963-594525 bp Neighborhood of RT #1 [585963, 594560] Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Feature: gene Location: 585963-586193 bp Feature: gene Location: 587156-588025 bp Ori: ODO76240.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 587678-587849 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 587678-587849 bp Feature: gene Location: 588681-589781 bp Ori: ODO76241.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 588861-589395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 588861 -589395 bp Feature: gene Location: 589896-592142 bp Ori: ODO76242.1 Feature: domain Description: AAA_15 Location: 589899-590907 bp Feature: domain Description: AAA_1 5 Location: 589899-590907 bp Feature: gene Location: 593541-594560 bp Ori: ODO76243.1 Feature: domain Description: DUF4917 Location: 593601-594525 bp Feature: domain Description: DUF491 7 Location: 593601 -594525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263)

Seq: MAGE01000076.1 Klebsiella pneumoniae strain CFSAN044569 CFSAN044569_6, whole genome shotgun sequence (303613 bp)
Overview 1 RT 1: 30262-38880 bp Neighborhood of RT #1 [30262, 38897] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 30262-30975 bp Ori: ODO67663.1 Feature: domain Description: YqgA Location: 30268-30970 bp Feature: domain Description: YqgA Location: 302 68-30970 bp Feature: gene Location: 31499-32737 bp Feature: domain Description: PRK09692 Location: 31505-32687 bp Feature: domain Description: PRK09692 Location: 31505-32 687 bp Feature: gene Location: 33414-35495 bp Ori: ODO67664.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33825-34269 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3382 5-342 69 bp Feature: gene Location: 35492-38086 bp Ori: ODO67665.1 Feature: domain Description: FimD Location: 35534-38075 bp Feature: domain Description: FimD Location: 35534-38075 bp Feature: gene Location: 38133-38897 bp Ori: ODO67666.1 Feature: domain Description: FimC Location: 38178-38880 bp Feature: domain Description: FimC Location: 38178-38880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: MAGE01000044.1 Klebsiella pneumoniae strain CFSAN044569 CFSAN044569_30, whole genome shotgun sequence (24563 bp)
Overview 1 RT 1: 1-4259 bp Neighborhood of RT #1 [1, 4267] N6_acetyl_AAC6 RVT-GII GIIM InsE PIN_VapC4-5_FitB-like Feature: gene Location: 1-135 bp Feature: domain Description: N6_acetyl_AAC6 Location: 19-136 bp Feature: domain Description: N6_acetyl_AAC6 Location: 19-13 6 bp Feature: gene Location: 781-2289 bp Ori: ODO73254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 9-1771 bp Feature: domain Description: GIIM Note: maturase Location: 1846-2044 bp Feature: domain Description: GIIM Note: maturase Location: 1846-2044 bp Feature: gene Location: 3363-3647 bp Ori: ODO73234.1 Feature: domain Description: InsE Location: 3375-3636 bp Feature: domain Description: InsE Location: 3 3 75-3 63 6 bp Feature: gene Location: 3851-4267 bp Ori: ODO73235.1 Feature: domain Description: PIN_VapC4-5_FitB-like Location: 3869-4259 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 3 869-4259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_acetyl_AAC6 (TIGR04431), RVT-GII, GIIM (pfam08388), InsE (COG2963), PIN_VapC4-5_FitB-like (cd18754)