myRT

myRT report for GCA_001720805.1_ASM172080v1

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Seq: MAGI01000029.1 Klebsiella pneumoniae strain CFSAN044568 CFSAN044568_3, whole genome shotgun sequence (382723 bp)
Overview 1 RT 1: 364250-368945 bp Neighborhood of RT #1 [364250, 369268] PRK10094 PBP2_CrgA_like_3 NT_KNTase_like RVT-Retrons ParAB_family Feature: gene Location: 364250-365134 bp Ori: ODO99842.1 Feature: domain Description: PRK10094 Location: 364268-364499 bp Feature: domain Description: PRK1 0094 Location: 364268-364499 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 364526-365126 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 364526-3651 26 bp Feature: gene Location: 365259-366059 bp Ori: ODO99843.1 Feature: domain Description: NT_KNTase_like Location: 365295-365577 bp Feature: domain Description: NT_KNTase_like Location: 365295-365577 bp Feature: gene Location: 366444-367403 bp Ori: ODO99844.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366621-367146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366621 -3671 46 bp Feature: gene Location: 367422-367625 bp Feature: gene Location: 368198-369268 bp Ori: ODO99846.1 Feature: domain Description: ParAB_family Location: 368207-368945 bp Feature: domain Description: ParAB_family Location: 368207-368945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10094 (HTH-type transcriptional activator AllS), PBP2_CrgA_like_3 (cd08472), NT_KNTase_like (cd05403), RVT-Retrons, ParAB_family (cd02042)

Seq: MAGI01000042.1 Klebsiella pneumoniae strain CFSAN044568 CFSAN044568_41, whole genome shotgun sequence (11537 bp)
Overview 1 RT 1: 4971-9988 bp Neighborhood of RT #1 [4971, 9990] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 4971-6243 bp Feature: domain Description: umuC Location: 4974-5970 bp Feature: domain Description: umuC Location: 4974-5970 bp Feature: gene Location: 6243-6668 bp Ori: ODO98260.1 Feature: domain Description: PRK10276 Location: 6246-6654 bp Feature: domain Description: PRK102 76 Location: 62 46-6654 bp Feature: gene Location: 7073-8581 bp Ori: ODO98261.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-8189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-8189 bp Feature: gene Location: 8815-9045 bp Feature: gene Location: 9565-9990 bp Ori: ODO98263.1 Feature: domain Description: Antirestrict Location: 9700-9988 bp Feature: domain Description: Antirestrict Location: 9700-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)

Seq: MAGI01000062.1 Klebsiella pneumoniae strain CFSAN044568 CFSAN044568_6, whole genome shotgun sequence (321048 bp)
Overview 1 RT 1: 30262-38880 bp Neighborhood of RT #1 [30262, 38897] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 30262-30975 bp Ori: ODO95484.1 Feature: domain Description: YqgA Location: 30268-30970 bp Feature: domain Description: YqgA Location: 3 0268-3 0970 bp Feature: gene Location: 31499-32737 bp Feature: domain Description: PRK09692 Location: 31505-32687 bp Feature: domain Description: PRK09692 Location: 3 1505-3 2687 bp Feature: gene Location: 33414-35495 bp Ori: ODO95485.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33825-34269 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3 3 825-3 4269 bp Feature: gene Location: 35492-38086 bp Ori: ODO95486.1 Feature: domain Description: FimD Location: 35534-38075 bp Feature: domain Description: FimD Location: 3 553 4-3 8075 bp Feature: gene Location: 38133-38897 bp Ori: ODO95487.1 Feature: domain Description: FimC Location: 38178-38880 bp Feature: domain Description: FimC Location: 3 8178-3 8880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)