myRT

myRT report for GCA_001720875.1_ASM172087v1

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Seq: MAGM01000027.1 Klebsiella pneumoniae strain CFSAN044566 CFSAN044566_3, whole genome shotgun sequence (382651 bp)
Overview 1 RT 1: 364174-368869 bp Neighborhood of RT #1 [364174, 369192] PRK10094 PBP2_CrgA_like_3 NT_KNTase_like RVT-Retrons ParAB_family Feature: gene Location: 364174-365058 bp Ori: ODP18234.1 Feature: domain Description: PRK10094 Location: 364192-364423 bp Feature: domain Description: PRK1 0094 Location: 3641 92-364423 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 364450-365050 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 364450-365050 bp Feature: gene Location: 365183-365983 bp Ori: ODP18235.1 Feature: domain Description: NT_KNTase_like Location: 365219-365501 bp Feature: domain Description: NT_KNTase_like Location: 36521 9-365501 bp Feature: gene Location: 366368-367327 bp Ori: ODP18236.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366545-367070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 366545-367070 bp Feature: gene Location: 367346-367549 bp Feature: gene Location: 368122-369192 bp Ori: ODP18238.1 Feature: domain Description: ParAB_family Location: 368131-368869 bp Feature: domain Description: ParAB_family Location: 3681 31 -368869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10094 (HTH-type transcriptional activator AllS), PBP2_CrgA_like_3 (cd08472), NT_KNTase_like (cd05403), RVT-Retrons, ParAB_family (cd02042)

Seq: MAGM01000049.1 Klebsiella pneumoniae strain CFSAN044566 CFSAN044566_5, whole genome shotgun sequence (321048 bp)
Overview 1 RT 1: 30262-38880 bp Neighborhood of RT #1 [30262, 38897] YqgA PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 30262-30975 bp Ori: ODP14612.1 Feature: domain Description: YqgA Location: 30268-30970 bp Feature: domain Description: YqgA Location: 302 68-30970 bp Feature: gene Location: 31499-32737 bp Feature: domain Description: PRK09692 Location: 31505-32687 bp Feature: domain Description: PRK09692 Location: 31505-32 687 bp Feature: gene Location: 33414-35495 bp Ori: ODP14613.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33825-34269 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3382 5-342 69 bp Feature: gene Location: 35492-38086 bp Ori: ODP14614.1 Feature: domain Description: FimD Location: 35534-38075 bp Feature: domain Description: FimD Location: 35534-38075 bp Feature: gene Location: 38133-38897 bp Ori: ODP14615.1 Feature: domain Description: FimC Location: 38178-38880 bp Feature: domain Description: FimC Location: 38178-38880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: MAGM01000036.1 Klebsiella pneumoniae strain CFSAN044566 CFSAN044566_38, whole genome shotgun sequence (11537 bp)
Overview 1 RT 1: 4971-9988 bp Neighborhood of RT #1 [4971, 9990] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 4971-6243 bp Feature: domain Description: umuC Location: 4974-5970 bp Feature: domain Description: umuC Location: 4974-5970 bp Feature: gene Location: 6243-6668 bp Ori: ODP16051.1 Feature: domain Description: PRK10276 Location: 6246-6654 bp Feature: domain Description: PRK10276 Location: 6246-6654 bp Feature: gene Location: 7073-8581 bp Ori: ODP16052.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-8189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7475-8189 bp Feature: gene Location: 8815-9045 bp Feature: gene Location: 9565-9990 bp Ori: ODP16054.1 Feature: domain Description: Antirestrict Location: 9700-9988 bp Feature: domain Description: Antirestrict Location: 9700-9988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)