myRT

myRT report for GCA_001720965.1_ASM172096v1

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Seq: CP012436.1 Enterococcus faecium strain ISMMS_VRE_2, complete genome (2932050 bp)
Overview 1 RT 1: 118048-122649 bp 2 RT 2: 179426-184608 bp 3 RT 3: 194849-200063 bp 4 RT 4: 2061321-2064552 bp 5 RT 5: 2070895-2075633 bp 6 RT 6: 2691122-2696356 bp 7 RT 7: 2699417-2709360 bp Neighborhood of RT #1 [118048, 122657] HTH_XRE DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [179426, 185435] Lysozyme_like Spr RVT-GII Neighborhood of RT #3 [194849, 200071] Zeta_toxin RVT-GII HNHc RelB_DinJ Neighborhood of RT #4 [2061321, 2065379] Transposase_mut RVT-GII Neighborhood of RT #5 [2070895, 2075710] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #6 [2691122, 2697183] Lysozyme_like Spr RVT-GII Neighborhood of RT #7 [2699417, 2709428] TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc DUF961 Feature: gene Location: 118048-118293 bp Ori: AOM17888.1 Feature: domain Description: HTH_XRE Location: 118099-118285 bp Feature: domain Description: HTH_XRE Location: 1 1 8099-1 1 8285 bp Feature: gene Location: 118669-119148 bp Ori: AOM17889.1 Feature: domain Description: DUF3841 Location: 118678-119053 bp Feature: domain Description: DUF3841 Location: 1 1 8678-1 1 9053 bp Feature: gene Location: 119326-120822 bp Ori: AOM20398.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 119734-120190 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 1 9734-1 201 90 bp Feature: gene Location: 120968-121282 bp Ori: AOM17890.1 Feature: domain Description: AlbA_2 Location: 121007-121178 bp Feature: domain Description: AlbA_2 Location: 1 21 007-1 21 1 78 bp Feature: gene Location: 121398-122657 bp Ori: AOM17891.1 Feature: domain Description: PRK09290 Location: 121404-122649 bp Feature: domain Description: PRK09290 Location: 1 21 404-1 22649 bp Feature: gene Location: 179426-180430 bp Ori: AOM17941.1 Feature: domain Description: Lysozyme_like Location: 179573-180035 bp Feature: domain Description: Lysozyme_like Location: 1 79573-1 80035 bp Feature: domain Description: Spr Location: 180062-180416 bp Feature: domain Description: Spr Location: 1 80062-1 8041 6 bp Feature: gene Location: 180427-182550 bp Feature: gene Location: 183609-185435 bp Ori: AOM17943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183909-184608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83909-1 84608 bp Feature: gene Location: 194849-195523 bp Ori: AOM17951.1 Feature: domain Description: Zeta_toxin Location: 194948-195431 bp Feature: domain Description: Zeta_toxin Location: 1 94948-1 95431 bp Feature: gene Location: 195601-195840 bp Feature: gene Location: 195934-197793 bp Ori: AOM17953.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196243-196984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96243-1 96984 bp Feature: domain Description: HNHc Note: nucleases Location: 197539-197677 bp Feature: domain Description: HNHc Note: nucleases Location: 1 97539-1 97677 bp Feature: gene Location: 197912-198142 bp Feature: gene Location: 199736-200071 bp Ori: AOM17955.1 Feature: domain Description: RelB_DinJ Location: 199940-200063 bp Feature: domain Description: RelB_DinJ Location: 1 99940-200063 bp Feature: gene Location: 2061321-2062508 bp Ori: AOM19590.1 Feature: domain Description: Transposase_mut Location: 2061324-2062467 bp Feature: domain Description: Transposase_mut Location: 2061 324-2062467 bp Feature: gene Location: 2063553-2065379 bp Ori: AOM19591.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063853-2064552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063853-2064552 bp Feature: gene Location: 2070895-2071395 bp Ori: AOM19595.1 Feature: domain Description: ArdA Location: 2070913-2071384 bp Feature: domain Description: ArdA Location: 207091 3-2071 384 bp Feature: gene Location: 2071408-2071632 bp Feature: gene Location: 2071736-2073646 bp Ori: AOM19597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072069-2072807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2072069-2072807 bp Feature: domain Description: HNHc Note: nucleases Location: 2073362-2073527 bp Feature: domain Description: HNHc Note: nucleases Location: 2073362-2073527 bp Feature: gene Location: 2074392-2074511 bp Ori: AOM19598.1 Feature: domain Description: DUF3789 Location: 2074401-2074494 bp Feature: domain Description: DUF3789 Location: 2074401 -2074494 bp Feature: gene Location: 2074526-2075710 bp Ori: AOM19599.1 Feature: domain Description: HTH_XRE Location: 2074556-2074700 bp Feature: domain Description: HTH_XRE Location: 2074556-2074700 bp Feature: domain Description: Rol_Rep_N Location: 2074733-2074997 bp Feature: domain Description: Rol_Rep_N Location: 2074733-2074997 bp Feature: domain Description: Rep_trans Location: 2075021-2075633 bp Feature: domain Description: Rep_trans Location: 2075021 -2075633 bp Feature: gene Location: 2691122-2692123 bp Ori: AOM20174.1 Feature: domain Description: Lysozyme_like Location: 2691266-2691725 bp Feature: domain Description: Lysozyme_like Location: 2691 266-2691 725 bp Feature: domain Description: Spr Location: 2691752-2692106 bp Feature: domain Description: Spr Location: 2691 752-26921 06 bp Feature: gene Location: 2692120-2694303 bp Feature: gene Location: 2695357-2697183 bp Ori: AOM20176.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695657-2696356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2695657-2696356 bp Feature: gene Location: 2699417-2699809 bp Ori: AOM20177.1 Feature: domain Description: TcpE Location: 2699435-2699735 bp Feature: domain Description: TcpE Location: 2699435-2699735 bp Feature: gene Location: 2699896-2700393 bp Ori: AOM20178.1 Feature: domain Description: ArdA Location: 2699914-2700379 bp Feature: domain Description: ArdA Location: 269991 4-2700379 bp Feature: gene Location: 2700838-2702748 bp Ori: AOM20179.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701171-2701909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2701 1 71 -2701 909 bp Feature: domain Description: HNHc Note: nucleases Location: 2702464-2702629 bp Feature: domain Description: HNHc Note: nucleases Location: 2702464-2702629 bp Feature: gene Location: 2703532-2704737 bp Ori: AOM20180.1 Feature: domain Description: HTH_XRE Location: 2703577-2703721 bp Feature: domain Description: HTH_XRE Location: 2703577-2703721 bp Feature: domain Description: Rol_Rep_N Location: 2703748-2704015 bp Feature: domain Description: Rol_Rep_N Location: 2703748-270401 5 bp Feature: domain Description: Rep_trans Location: 2704039-2704648 bp Feature: domain Description: Rep_trans Location: 2704039-2704648 bp Feature: gene Location: 2704916-2705200 bp Feature: gene Location: 2705294-2707153 bp Ori: AOM20182.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705603-2706344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2705603-2706344 bp Feature: domain Description: HNHc Note: nucleases Location: 2706899-2707037 bp Feature: domain Description: HNHc Note: nucleases Location: 2706899-2707037 bp Feature: gene Location: 2707272-2707502 bp Feature: gene Location: 2709042-2709428 bp Ori: AOM20184.1 Feature: domain Description: DUF961 Location: 2709060-2709360 bp Feature: domain Description: DUF961 Location: 2709060-2709360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Zeta_toxin (pfam06414), HNHc (smart00507)
RelB_DinJ (TIGR02384), Transposase_mut (pfam00872), ArdA (pfam07275), DUF3789 (pfam12664), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), TcpE (pfam12648), DUF961 (pfam06125)

Seq: CP012438.1 Enterococcus faecium strain ISMMS_VRE_2 plasmid ISMMS_VRE2_p3 sequence (74986 bp)
Overview 1 RT 1: 67926-74628 bp Neighborhood of RT #1 [67926, 74628] RVT-GII Feature: gene Location: 67926-69044 bp Feature: gene Location: 69077-69364 bp Feature: gene Location: 70871-72733 bp Ori: AOM20760.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71180-71918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71180-71918 bp Feature: gene Location: 74102-74449 bp Feature: gene Location: 74446-74628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CP012437.1 Enterococcus faecium strain ISMMS_VRE_2 plasmid ISMMS_VRE2_p1, complete sequence (196671 bp)
Overview 1 RT 1: 179494-186799 bp Neighborhood of RT #1 [179494, 186804] Rve RVT-AbiP2 Tra8 PinE Feature: gene Location: 179494-179910 bp Feature: gene Location: 180673-181353 bp Ori: AOM20663.1 Feature: domain Description: Rve Location: 180676-181324 bp Feature: domain Description: Rve Location: 180676-1813 24 bp Feature: gene Location: 183192-184580 bp Ori: AOM20679.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 183453-183918 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 183 453 -183 918 bp Feature: gene Location: 184645-185598 bp Ori: AOM20664.1 Feature: domain Description: Tra8 Location: 184648-185575 bp Feature: domain Description: Tra8 Location: 184648-185575 bp Feature: gene Location: 186241-186804 bp Ori: AOM20665.1 Feature: domain Description: PinE Location: 186253-186799 bp Feature: domain Description: PinE Location: 186253 -186799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: CP012439.1 Enterococcus faecium strain ISMMS_VRE_2 plasmid ISMMS_VRE2_p2 sequence (81463 bp)
Overview 1 RT 1: 24328-30052 bp Neighborhood of RT #1 [24328, 30052] PinE RVT-GII PolY_Pol_V_umuC Feature: gene Location: 24328-24531 bp Feature: gene Location: 24742-25326 bp Ori: AOM20788.1 Feature: domain Description: PinE Location: 24748-25309 bp Feature: domain Description: PinE Location: 24 74 8-25309 bp Feature: gene Location: 26470-28332 bp Ori: AOM20789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26779-27517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26779-27517 bp Feature: gene Location: 28414-29709 bp Ori: AOM20790.1 Feature: domain Description: PolY_Pol_V_umuC Location: 28453-29488 bp Feature: domain Description: PolY_Pol_V_umuC Location: 284 53-294 88 bp Feature: gene Location: 29702-30052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII, PolY_Pol_V_umuC (cd01700)