myRT

myRT report for GCA_001720985.1_ASM172098v1

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Seq: CP012444.1 Enterococcus faecium strain ISMMS_VRE_3 plasmid ISMMS_VRE3_p4, complete sequence (33769 bp)
Overview 1 RT 1: 17700-24141 bp Neighborhood of RT #1 [17700, 24141] PinE Tra8 RVT-AbiP2 Rve Feature: gene Location: 17700-18263 bp Ori: AOM23874.1 Feature: domain Description: PinE Location: 17712-18258 bp Feature: domain Description: PinE Location: 1 771 2-1 8258 bp Feature: gene Location: 18906-19859 bp Ori: AOM23875.1 Feature: domain Description: Tra8 Location: 18909-19836 bp Feature: domain Description: Tra8 Location: 1 8909-1 9836 bp Feature: gene Location: 19924-21312 bp Ori: AOM23890.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 20185-20650 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 201 85-20650 bp Feature: gene Location: 23089-23769 bp Ori: AOM23876.1 Feature: domain Description: Rve Location: 23092-23740 bp Feature: domain Description: Rve Location: 23092-23740 bp Feature: gene Location: 23857-24141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, Rve (COG3316)

Seq: CP012440.1 Enterococcus faecium strain ISMMS_VRE_3 genome (2852848 bp)
Overview 1 RT 1: 1446586-1458526 bp 2 RT 2: 1461223-1467218 bp 3 RT 3: 1526353-1530954 bp 4 RT 4: 1876168-1886105 bp 5 RT 5: 1888413-1894457 bp 6 RT 6: 2037747-2044578 bp Neighborhood of RT #1 [1446586, 1458540] RelB_DinJ RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA Neighborhood of RT #2 [1461223, 1467232] RVT-GII Lysozyme_like Spr Neighborhood of RT #3 [1526353, 1530962] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Neighborhood of RT #4 [1876168, 1886179] DUF961 RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE Neighborhood of RT #5 [1888413, 1894474] RVT-GII Lysozyme_like Spr Neighborhood of RT #6 [2037747, 2044586] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 1446586-1446921 bp Ori: AOM22152.1 Feature: domain Description: RelB_DinJ Location: 1446790-1446913 bp Feature: domain Description: RelB_DinJ Location: 1446790-1446913 bp Feature: gene Location: 1448515-1448745 bp Feature: gene Location: 1448864-1450723 bp Ori: AOM22154.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1449173-1449914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1449173-1449914 bp Feature: domain Description: HNHc Note: nucleases Location: 1450469-1450607 bp Feature: domain Description: HNHc Note: nucleases Location: 1450469-1450607 bp Feature: gene Location: 1450817-1451056 bp Feature: gene Location: 1451134-1451808 bp Ori: AOM22156.1 Feature: domain Description: Zeta_toxin Location: 1451233-1451716 bp Feature: domain Description: Zeta_toxin Location: 14512 33-1451716 bp Feature: gene Location: 1453722-1454906 bp Ori: AOM22160.1 Feature: domain Description: HTH_XRE Location: 1453752-1453896 bp Feature: domain Description: HTH_XRE Location: 1453752 -1453896 bp Feature: domain Description: Rol_Rep_N Location: 1453929-1454193 bp Feature: domain Description: Rol_Rep_N Location: 145392 9-1454193 bp Feature: domain Description: Rep_trans Location: 1454217-1454829 bp Feature: domain Description: Rep_trans Location: 14542 17-145482 9 bp Feature: gene Location: 1454921-1455040 bp Ori: AOM22161.1 Feature: domain Description: DUF3789 Location: 1454930-1455023 bp Feature: domain Description: DUF3789 Location: 1454930-145502 3 bp Feature: gene Location: 1455786-1457696 bp Ori: AOM22162.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456119-1456857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1456119-1456857 bp Feature: domain Description: HNHc Note: nucleases Location: 1457412-1457577 bp Feature: domain Description: HNHc Note: nucleases Location: 1457412 -1457577 bp Feature: gene Location: 1457800-1458024 bp Feature: gene Location: 1458037-1458540 bp Ori: AOM22164.1 Feature: domain Description: ArdA Location: 1458055-1458526 bp Feature: domain Description: ArdA Location: 1458055-145852 6 bp Feature: gene Location: 1461223-1463049 bp Ori: AOM22166.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461523-1462222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146152 3-1462 2 2 2 bp Feature: gene Location: 1464108-1466231 bp Feature: gene Location: 1466228-1467232 bp Ori: AOM22168.1 Feature: domain Description: Lysozyme_like Location: 1466375-1466837 bp Feature: domain Description: Lysozyme_like Location: 1466375-1466837 bp Feature: domain Description: Spr Location: 1466864-1467218 bp Feature: domain Description: Spr Location: 1466864-14672 18 bp Feature: gene Location: 1526353-1527612 bp Ori: AOM22221.1 Feature: domain Description: PRK09290 Location: 1526359-1527604 bp Feature: domain Description: PRK092 90 Location: 152 6359-152 7604 bp Feature: gene Location: 1527728-1528042 bp Ori: AOM22222.1 Feature: domain Description: AlbA_2 Location: 1527767-1527938 bp Feature: domain Description: AlbA_2 Location: 152 7767-152 7938 bp Feature: gene Location: 1528188-1529684 bp Ori: AOM23444.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1528596-1529052 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 152 8596-152 9052 bp Feature: gene Location: 1529862-1530341 bp Ori: AOM22223.1 Feature: domain Description: DUF3841 Location: 1529871-1530246 bp Feature: domain Description: DUF3841 Location: 152 9871-15302 46 bp Feature: gene Location: 1530717-1530962 bp Ori: AOM22224.1 Feature: domain Description: HTH_XRE Location: 1530768-1530954 bp Feature: domain Description: HTH_XRE Location: 1530768-1530954 bp Feature: gene Location: 1876168-1876554 bp Ori: AOM22536.1 Feature: domain Description: DUF961 Location: 1876186-1876486 bp Feature: domain Description: DUF961 Location: 1876186-1876486 bp Feature: gene Location: 1878094-1878324 bp Feature: gene Location: 1878443-1880302 bp Ori: AOM22538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878752-1879493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1878752 -1879493 bp Feature: domain Description: HNHc Note: nucleases Location: 1880048-1880186 bp Feature: domain Description: HNHc Note: nucleases Location: 1880048-1880186 bp Feature: gene Location: 1880396-1880680 bp Feature: gene Location: 1880859-1882064 bp Ori: AOM22540.1 Feature: domain Description: HTH_XRE Location: 1880904-1881048 bp Feature: domain Description: HTH_XRE Location: 1880904-1881048 bp Feature: domain Description: Rol_Rep_N Location: 1881075-1881342 bp Feature: domain Description: Rol_Rep_N Location: 1881075-1881342 bp Feature: domain Description: Rep_trans Location: 1881366-1881975 bp Feature: domain Description: Rep_trans Location: 1881366-1881975 bp Feature: gene Location: 1882848-1884758 bp Ori: AOM22541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883181-1883919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883181-1883919 bp Feature: domain Description: HNHc Note: nucleases Location: 1884474-1884639 bp Feature: domain Description: HNHc Note: nucleases Location: 1884474-1884639 bp Feature: gene Location: 1885203-1885700 bp Ori: AOM22542.1 Feature: domain Description: ArdA Location: 1885221-1885686 bp Feature: domain Description: ArdA Location: 18852 2 1-1885686 bp Feature: gene Location: 1885787-1886179 bp Ori: AOM22543.1 Feature: domain Description: TcpE Location: 1885805-1886105 bp Feature: domain Description: TcpE Location: 1885805-1886105 bp Feature: gene Location: 1888413-1890239 bp Ori: AOM22544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888713-1889412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888713-1889412 bp Feature: gene Location: 1891293-1893476 bp Feature: gene Location: 1893473-1894474 bp Ori: AOM22546.1 Feature: domain Description: Lysozyme_like Location: 1893617-1894076 bp Feature: domain Description: Lysozyme_like Location: 1893617-1894076 bp Feature: domain Description: Spr Location: 1894103-1894457 bp Feature: domain Description: Spr Location: 1894103-1894457 bp Feature: gene Location: 2037747-2038628 bp Ori: AOM22672.1 Feature: domain Description: CcmA Location: 2037750-2038620 bp Feature: domain Description: CcmA Location: 2 037750-2 03862 0 bp Feature: gene Location: 2038882-2039481 bp Ori: AOM22673.1 Feature: domain Description: AcrR Location: 2038900-2039386 bp Feature: domain Description: AcrR Location: 2 038900-2 039386 bp Feature: gene Location: 2039968-2041356 bp Ori: AOM22674.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040289-2040904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0402 89-2 040904 bp Feature: domain Description: GIIM Note: maturase Location: 2040961-2041177 bp Feature: domain Description: GIIM Note: maturase Location: 2 040961-2 041177 bp Feature: gene Location: 2041449-2042750 bp Ori: AOM22675.1 Feature: domain Description: CE4_DAC_u3_5s Location: 2042118-2042508 bp Feature: domain Description: CE4_DAC_u3_5s Location: 2 042 118-2 042 508 bp Feature: gene Location: 2043330-2044586 bp Ori: AOM22676.1 Feature: domain Description: PRK13354 Location: 2043333-2044578 bp Feature: domain Description: PRK13354 Location: 2 043333-2 044578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), RVT-GII, HNHc (smart00507), Zeta_toxin (pfam06414), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), ArdA (pfam07275), Lysozyme_like (pfam13702)
Spr (COG0791), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952), DUF961 (pfam06125), TcpE (pfam12648), CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388)
CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)