myRT

myRT report for GCA_001721005.1_ASM172100v1

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Seq: CP012451.1 Enterococcus faecium strain ISMMS_VRE_4 plasmid ISMMS_VRE4_p4, complete sequence (39395 bp)
Overview 1 RT 1: 1-4633 bp Neighborhood of RT #1 [1, 4638] HsdM RVT-AbiP2 Tra8 PinE Feature: gene Location: 1-691 bp Ori: AOM26865.1 Feature: domain Description: HsdM Location: 22-688 bp Feature: domain Description: HsdM Location: 22-688 bp Feature: gene Location: 1029-2417 bp Ori: AOM26903.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1290-1755 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 290-1 755 bp Feature: gene Location: 2482-3435 bp Ori: AOM26866.1 Feature: domain Description: Tra8 Location: 2485-3412 bp Feature: domain Description: Tra8 Location: 2485-341 2 bp Feature: gene Location: 4075-4638 bp Ori: AOM26867.1 Feature: domain Description: PinE Location: 4087-4633 bp Feature: domain Description: PinE Location: 4087-4633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: CP012447.1 Enterococcus faecium strain ISMMS_VRE_4, complete genome (2933574 bp)
Overview 1 RT 1: 1821863-1827524 bp 2 RT 2: 2757010-2762206 bp Neighborhood of RT #1 [1821863, 1828351] Transposase_mut RVT-GII Neighborhood of RT #2 [2757010, 2762277] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE Feature: gene Location: 1821863-1823992 bp Feature: gene Location: 1824293-1825480 bp Ori: AOM25577.1 Feature: domain Description: Transposase_mut Location: 1824296-1825439 bp Feature: domain Description: Transposase_mut Location: 182 42 96-182 5439 bp Feature: gene Location: 1826525-1828351 bp Ori: AOM25578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1826825-1827524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 682 5-182 752 4 bp Feature: gene Location: 2757010-2758194 bp Ori: AOM26400.1 Feature: domain Description: HTH_XRE Location: 2757040-2757184 bp Feature: domain Description: HTH_XRE Location: 2 757040-2 757184 bp Feature: domain Description: Rol_Rep_N Location: 2757217-2757481 bp Feature: domain Description: Rol_Rep_N Location: 2 7572 17-2 757481 bp Feature: domain Description: Rep_trans Location: 2757505-2758117 bp Feature: domain Description: Rep_trans Location: 2 757505-2 758117 bp Feature: gene Location: 2758209-2758328 bp Ori: AOM26401.1 Feature: domain Description: DUF3789 Location: 2758218-2758311 bp Feature: domain Description: DUF3789 Location: 2 7582 18-2 758311 bp Feature: gene Location: 2759074-2760984 bp Ori: AOM26402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2759407-2760145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 759407-2 760145 bp Feature: domain Description: HNHc Note: nucleases Location: 2760700-2760865 bp Feature: domain Description: HNHc Note: nucleases Location: 2 760700-2 760865 bp Feature: gene Location: 2761325-2761828 bp Ori: AOM26403.1 Feature: domain Description: ArdA Location: 2761343-2761814 bp Feature: domain Description: ArdA Location: 2 761343-2 761814 bp Feature: gene Location: 2761888-2762277 bp Ori: AOM26404.1 Feature: domain Description: TcpE Location: 2761906-2762206 bp Feature: domain Description: TcpE Location: 2 761906-2 762 2 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648)